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Sample GSM175743 Query DataSets for GSM175743
Status Public on Oct 11, 2007
Title Neisseria meningitidis isolate 630601-2
Sample type genomic
 
Channel 1
Source name menC 630601
Organism Neisseria meningitidis
Characteristics Neisseria meningitidis Serogroup C isolate
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted by using Wizard® Genomic DNA Purification
Kit (Promega)
Label Cy5
Label protocol Genomic DNA was fluorescently labeled by random priming with the Klenow fragment.
 
Channel 2
Source name menC 053442
Organism Neisseria meningitidis
Characteristics Neisseria meningitidis Serogroup C isolate (ST4821)
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted by using Wizard® Genomic DNA Purification
Kit (Promega)
Label Cy3
Label protocol Genomic DNA was fluorescently labeled by random priming with the Klenow fragment.
 
 
Hybridization protocol samples were hybridized overnight at 65°C.
Scan protocol The processed slides were scanned with a GenePix 4000B
scanner (Axon). Fluorescent spots and the local background
intensities were quantified with GenePix Pro 5.0 software (Axon).
Description CGH
Data processing MIDAS (TIGR) software
GACK (Genomotyping Analysis by Charlie Kim, Genome Biology 2002)
 
Submission date Mar 19, 2007
Last update date Oct 10, 2007
Contact name Junping Peng
E-mail(s) pengjp@gmail.com
Organization name Chinese center for disease control and prevention
Lab State key lab for molecular virology and genetic engineering
Street address No 6, Rongjing Eastern Street, BDA
City Beijing
ZIP/Postal code 100176
Country China
 
Platform ID GPL5011
Series (1)
GSE7331 CGH result of Neisseria meningitidis ST-7 isolates

Data table header descriptions
ID_REF
VALUE log2 of PRE_VALUE
BkgA B532 Median
BkgB B635 Median
IA F532 Median
IB F635 Median
PRE_VALUE Ration of median (635/532)

Data table
ID_REF VALUE BkgA BkgB IA IB PRE_VALUE
1 49220 19780 0 0 0
2 0.320799984 68016 29952 10829520 13526319 1.249022948
3 -0.172750698 61020 27000 12171600 10798030 0.887149594
4 -0.13177844 81624 35800 16614064 15163750 0.912705645
5 -0.525482096 69888 31200 16709472 11608520 0.694726919
6 0.80504533 78044 35800 4654716 8132723 1.747200689
7 0.56048277 81624 40096 4749228 7003984 1.474762635
8 0.135767631 82340 42960 14361528 15778684 1.098677244
9 0.048268296 80908 40812 8141636 8418639 1.034023015
10 0.1922051 90132 45472 12123972 13851743 1.14250866
11 0.037227978 78760 36516 8860500 9092116 1.026140286
12 48300 21620 0 0 0
13 0.223685614 84448 40600 8915760 10411048 1.167712904
14 0.281335839 85260 41412 7030296 8544057 1.215319668
15 0.19763113 96672 49248 18353088 21047574 1.146813768
16 0.05949844 102144 52896 16792656 17499684 1.042103405
17 0.003487479 126280 65436 18737656 18783006 1.00242026
18 -0.065430268 95760 46512 20937696 20009324 0.95566026
19 0.389002361 80908 36516 12447660 16300056 1.309487566
20 -0.136740917 92568 45472 14692328 13363724 0.90957158

Total number of rows: 2592

Table truncated, full table size 122 Kbytes.




Supplementary data files not provided

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