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Sample GSM175753 Query DataSets for GSM175753
Status Public on Oct 11, 2007
Title Neisseria meningitidis isolate A200-2
Sample type genomic
 
Channel 1
Source name menA 200
Organism Neisseria meningitidis
Characteristics Neisseria meningitidis Serogroup A isolate
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted by using Wizard® Genomic DNA Purification
Kit (Promega)
Label Cy5
Label protocol Genomic DNA was fluorescently labeled by random priming with the Klenow fragment.
 
Channel 2
Source name menC 053442
Organism Neisseria meningitidis
Characteristics Neisseria meningitidis Serogroup C isolate (ST4821)
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted by using Wizard® Genomic DNA Purification
Kit (Promega)
Label Cy3
Label protocol Genomic DNA was fluorescently labeled by random priming with the Klenow fragment.
 
 
Hybridization protocol samples were hybridized overnight at 65°C.
Scan protocol The processed slides were scanned with a GenePix 4000B
scanner (Axon). Fluorescent spots and the local background
intensities were quantified with GenePix Pro 5.0 software (Axon).
Description CGH
Data processing MIDAS (TIGR) software
GACK (Genomotyping Analysis by Charlie Kim, Genome Biology 2002)
 
Submission date Mar 19, 2007
Last update date Oct 10, 2007
Contact name Junping Peng
E-mail(s) pengjp@gmail.com
Organization name Chinese center for disease control and prevention
Lab State key lab for molecular virology and genetic engineering
Street address No 6, Rongjing Eastern Street, BDA
City Beijing
ZIP/Postal code 100176
Country China
 
Platform ID GPL5011
Series (1)
GSE7331 CGH result of Neisseria meningitidis ST-7 isolates

Data table header descriptions
ID_REF
VALUE log2 of PRE_VALUE
BkgA B532 Median
BkgB B635 Median
IA F532 Median
IB F635 Median
PRE_VALUE Ration of median (635/532)

Data table
ID_REF VALUE BkgA BkgB IA IB PRE_VALUE
1 46000 16100 0 0 0
2 0.168857379 39200 15288 8643208 9716416 1.124167786
3 -0.281155095 39200 15680 8450736 6954380 0.822931872
4 -0.213652823 48760 19780 10590120 9132401 0.86235104
5 -0.422344986 47840 19320 11339920 8461970 0.746210732
6 2.005450195 46920 19780 1622420 6514243 4.01513973
7 0.024465192 54000 22140 6349860 6458459 1.017102582
8 0.069826098 47840 19780 9518320 9990335 1.049590159
9 0.061409574 46920 20700 7962140 8308372 1.043484792
10 0.022536332 54000 23220 9827460 9982180 1.015743641
11 -0.102898637 46460 19320 7315380 6811791 0.93116024
12 45540 17940 0 0 0
13 0.23227591 45540 18860 7453840 8755926 1.174686604
14 0.171207817 54000 22680 6626880 7461872 1.126000773
15 0.129424098 46920 19780 9928640 10860512 1.093856963
16 -0.113970245 46000 19780 10942020 10110882 0.92404163
17 0.054599969 46920 20240 5624420 5841360 1.038571088
18 -0.01635452 46000 19780 9321440 9216368 0.988727922
325 0.091750723 59904 25584 10343424 11022600 1.065662589
326 0.750593346 70884 30072 9541416 16053286 1.682484654

Total number of rows: 2592

Table truncated, full table size 118 Kbytes.




Supplementary data files not provided

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