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Sample GSM175755 Query DataSets for GSM175755
Status Public on Oct 11, 2007
Title Neisseria meningitidis isolate A210-1
Sample type genomic
 
Channel 1
Source name menA 210
Organism Neisseria meningitidis
Characteristics Neisseria meningitidis Serogroup A isolate
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted by using Wizard® Genomic DNA Purification
Kit (Promega)
Label Cy5
Label protocol Genomic DNA was fluorescently labeled by random priming with the Klenow fragment.
 
Channel 2
Source name menC 053442
Organism Neisseria meningitidis
Characteristics Neisseria meningitidis Serogroup C isolate (ST4821)
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted by using Wizard® Genomic DNA Purification
Kit (Promega)
Label Cy3
Label protocol Genomic DNA was fluorescently labeled by random priming with the Klenow fragment.
 
 
Hybridization protocol samples were hybridized overnight at 65°C.
Scan protocol The processed slides were scanned with a GenePix 4000B
scanner (Axon). Fluorescent spots and the local background
intensities were quantified with GenePix Pro 5.0 software (Axon).
Description CGH
Data processing MIDAS (TIGR) software
GACK (Genomotyping Analysis by Charlie Kim, Genome Biology 2002)
 
Submission date Mar 19, 2007
Last update date Oct 10, 2007
Contact name Junping Peng
E-mail(s) pengjp@gmail.com
Organization name Chinese center for disease control and prevention
Lab State key lab for molecular virology and genetic engineering
Street address No 6, Rongjing Eastern Street, BDA
City Beijing
ZIP/Postal code 100176
Country China
 
Platform ID GPL5011
Series (1)
GSE7331 CGH result of Neisseria meningitidis ST-7 isolates

Data table header descriptions
ID_REF
VALUE log2 of PRE_VALUE
BkgA B532 Median
BkgB B635 Median
IA F532 Median
IB F635 Median
PRE_VALUE Ratio of median (635/532)

Data table
ID_REF VALUE BkgA BkgB IA IB PRE_VALUE
1 57500 20240 0 0 0
2 0.097733176 78624 28704 15576288 16668042 1.070090769
3 -0.362920582 68580 24840 9272880 7210488 0.77758884
4 -0.199281081 68580 25920 13026960 11346280 0.870984481
5 -0.500750783 57500 22540 10674300 7543943 0.706738896
6 2.081689347 55200 22540 1761340 7455798 4.233025992
7 -0.050626292 65880 27540 7306200 7054261 0.965517095
8 0.076824445 73632 30576 10377744 10945344 1.054693968
9 -0.100390454 63720 26460 7508700 7003969 0.932780508
10 0.014913855 54280 22540 6897240 6968910 1.010391113
11 -0.137118057 63180 25380 5873040 5340554 0.909333837
12 51520 21160 0 0 0
13 0.016994308 102144 42864 9910704 10028138 1.011849209
14 0.11158909 62640 26460 5564700 6012200 1.080417633
15 0.17866602 61020 26460 10375020 11742830 1.131836854
16 -0.13352783 60480 25920 9996480 9112787 0.911599583
17 0.089050349 53360 22540 6624460 7046238 1.063669793
18 -0.078272771 61560 25920 9358740 8864514 0.947190968
19 0.14589298 58420 21620 5466640 6048374 1.106415275
20 -0.199103791 80496 30576 10012080 8721438 0.871091521

Total number of rows: 2592

Table truncated, full table size 120 Kbytes.




Supplementary data files not provided

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