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Sample GSM175757 Query DataSets for GSM175757
Status Public on Oct 11, 2007
Title Neisseria meningitidis isolate A210-3
Sample type genomic
 
Channel 1
Source name menA 210
Organism Neisseria meningitidis
Characteristics Neisseria meningitidis Serogroup A isolate
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted by using Wizard® Genomic DNA Purification
Kit (Promega)
Label Cy5
Label protocol Genomic DNA was fluorescently labeled by random priming with the Klenow fragment.
 
Channel 2
Source name menC 053442
Organism Neisseria meningitidis
Characteristics Neisseria meningitidis Serogroup C isolate (ST4821)
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted by using Wizard® Genomic DNA Purification
Kit (Promega)
Label Cy3
Label protocol Genomic DNA was fluorescently labeled by random priming with the Klenow fragment.
 
 
Hybridization protocol samples were hybridized overnight at 65°C.
Scan protocol The processed slides were scanned with a GenePix 4000B
scanner (Axon). Fluorescent spots and the local background
intensities were quantified with GenePix Pro 5.0 software (Axon).
Description CGH
Data processing MIDAS (TIGR) software
GACK (Genomotyping Analysis by Charlie Kim, Genome Biology 2002)
 
Submission date Mar 19, 2007
Last update date Oct 10, 2007
Contact name Junping Peng
E-mail(s) pengjp@gmail.com
Organization name Chinese center for disease control and prevention
Lab State key lab for molecular virology and genetic engineering
Street address No 6, Rongjing Eastern Street, BDA
City Beijing
ZIP/Postal code 100176
Country China
 
Platform ID GPL5011
Series (1)
GSE7331 CGH result of Neisseria meningitidis ST-7 isolates

Data table header descriptions
ID_REF
VALUE log2 of PRE_VALUE
BkgA B532 Median
BkgB B635 Median
IA F532 Median
IB F635 Median
PRE_VALUE Ratio of median (635/532)

Data table
ID_REF VALUE BkgA BkgB IA IB PRE_VALUE
1 47840 19320 0 0 0
2 -0.008033381 60480 26460 14368860 14289072 0.994447159
3 -0.300216191 43904 20776 7536984 6121016 0.812130688
4 -0.096432569 45472 21560 8927016 8349822 0.935343008
5 -0.382264287 40376 18816 10573808 8112569 0.767232486
6 2.286078272 49220 24380 1179440 5752465 4.877284983
7 -0.047604748 47380 24380 9162740 8865330 0.967541369
8 0.132467912 57240 30240 8724240 9563226 1.096167231
9 0.029160071 49680 26680 7332400 7482112 1.020417871
10 0.091762555 41552 21952 6233192 6642534 1.065671329
11 -0.010042103 46460 22540 5769780 5729758 0.993063514
12 44620 21620 0 0 0
13 0.007607996 70168 35084 9862900 9915049 1.00528739
14 0.251278712 53460 26460 7008660 8342139 1.190261619
15 0.123344819 46000 22540 8968160 9768634 1.089257328
16 -0.011449092 47840 24840 8544500 8476960 0.9920955
17 0.113176962 53460 26460 8575200 9275000 1.081607426
18 -0.018230645 40768 20384 7794528 7696652 0.987442986
325 0.342901071 53460 25920 9668700 12262855 1.268304426
326 1.155900345 61776 30576 8920080 19876020 2.228233379

Total number of rows: 2592

Table truncated, full table size 120 Kbytes.




Supplementary data files not provided

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