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Sample GSM175761 Query DataSets for GSM175761
Status Public on Oct 11, 2007
Title Neisseria meningitidis isolate A281-1
Sample type genomic
 
Channel 1
Source name menA 281
Organism Neisseria meningitidis
Characteristics Neisseria meningitidis Serogroup A isolate
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted by using Wizard® Genomic DNA Purification
Kit (Promega)
Label Cy5
Label protocol Genomic DNA was fluorescently labeled by random priming with the Klenow fragment.
 
Channel 2
Source name menC 053442
Organism Neisseria meningitidis
Characteristics Neisseria meningitidis Serogroup C isolate (ST4821)
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted by using Wizard® Genomic DNA Purification
Kit (Promega)
Label Cy3
Label protocol Genomic DNA was fluorescently labeled by random priming with the Klenow fragment.
 
 
Hybridization protocol samples were hybridized overnight at 65°C.
Scan protocol The processed slides were scanned with a GenePix 4000B
scanner (Axon). Fluorescent spots and the local background
intensities were quantified with GenePix Pro 5.0 software (Axon).
Description CGH
Data processing MIDAS (TIGR) software
GACK (Genomotyping Analysis by Charlie Kim, Genome Biology 2002)
 
Submission date Mar 19, 2007
Last update date Oct 10, 2007
Contact name Junping Peng
E-mail(s) pengjp@gmail.com
Organization name Chinese center for disease control and prevention
Lab State key lab for molecular virology and genetic engineering
Street address No 6, Rongjing Eastern Street, BDA
City Beijing
ZIP/Postal code 100176
Country China
 
Platform ID GPL5011
Series (1)
GSE7331 CGH result of Neisseria meningitidis ST-7 isolates

Data table header descriptions
ID_REF
VALUE log2 of PRE_VALUE
BkgA B532 Median
BkgB B635 Median
IA F532 Median
IB F635 Median
PRE_VALUE Ratio of median (635/532)

Data table
ID_REF VALUE BkgA BkgB IA IB PRE_VALUE
1 44160 17020 0 0 0
2 0.291228274 60528 24336 10241712 12532595 1.223681646
3 -0.13476085 60528 25584 10296000 9377811 0.910820804
4 -0.061696841 71600 30072 6587916 6312123 0.958136534
5 -0.497012623 78044 32936 15073948 10680985 0.708572499
6 0.912273119 84488 36516 4538724 8541917 1.882008468
7 0.18914109 102312 42224 5887000 6711679 1.140084763
8 0.119806336 89500 37948 13805196 15000574 1.086588992
9 0.423880734 80192 34368 5376444 7212668 1.341531317
10 0.07848459 78044 31504 9974596 10532259 1.05590833
11 0.61347588 71280 24840 5034960 7703191 1.529940854
12 58420 20240 0 0 0
13 0.110976628 87696 38164 7139916 7710817 1.079959064
14 0.201239001 89376 41952 5898816 6781782 1.149685293
15 0.316616934 89376 41952 14941296 18607990 1.24540669
16 -0.018113719 79576 37352 13078884 12915699 0.987523018
17 0.144850577 78764 37352 9122820 10086337 1.105616136
18 0.198200686 77952 36540 13196624 15140046 1.147266604
325 0.063693087 66144 32448 6516432 6810569 1.045137738
326 0.960651492 57240 26460 4492260 8742785 1.946188555

Total number of rows: 2592

Table truncated, full table size 122 Kbytes.




Supplementary data files not provided

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