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Sample GSM176641 Query DataSets for GSM176641
Status Public on Oct 11, 2007
Title Neisseria meningitidis isolate A362-3
Sample type genomic
 
Channel 1
Source name menA 362
Organism Neisseria meningitidis
Characteristics Neisseria meningitidis Serogroup A isolate
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted by using Wizard Genomic DNA Purification Kit (Promega)
Label Cy5
Label protocol Genomic DNA was fluorescently labeled by random priming with the Klenow fragment.
 
Channel 2
Source name menC 053442
Organism Neisseria meningitidis
Characteristics Neisseria meningitidis Serogroup C isolate (ST4821)
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted by using Wizard Genomic DNA Purification Kit (Promega)
Label Cy3
Label protocol Genomic DNA was fluorescently labeled by random priming with the Klenow fragment.
 
 
Hybridization protocol Samples were hybridized overnight at 65°C.
Scan protocol The processed slides were scanned with a GenePix 4000B
scanner (Axon). Fluorescent spots and the local background
intensities were quantified with GenePix Pro 5.0 software (Axon).
Description CGH
Data processing MIDAS (TIGR) & GACK (Genomotyping Analysis by Charlie Kim, Genome Biology 2002)
 
Submission date Mar 20, 2007
Last update date Oct 10, 2007
Contact name Junping Peng
E-mail(s) pengjp@gmail.com
Organization name Chinese center for disease control and prevention
Lab State key lab for molecular virology and genetic engineering
Street address No 6, Rongjing Eastern Street, BDA
City Beijing
ZIP/Postal code 100176
Country China
 
Platform ID GPL5011
Series (1)
GSE7331 CGH result of Neisseria meningitidis ST-7 isolates

Data table header descriptions
ID_REF
VALUE log2 of PRE_VALUE
BkgA B532 Median
BkgB B635 Median
IA F532 Median
IB F635 Median
PRE_VALUE Ratio of median (635/532)

Data table
ID_REF VALUE BkgA BkgB IA IB PRE_VALUE
1 46460 21620 0 0 0
2 -0.026903197 66144 33072 11021712 10818085 0.981524921
3 -0.340639637 75896 39380 9479124 7485580 0.789691115
4 -0.307209049 86072 44660 11653012 9418008 0.80820375
5 -0.606828316 85260 44660 13077260 8587035 0.6566387
6 2.071614463 56700 29160 1873800 7876646 4.20356815
7 -0.193106602 65520 36816 5713344 4997577 0.874720129
8 -0.065759011 56700 35100 4503060 4302415 0.955442521
9 0.435301847 55080 32940 3662280 4952112 1.352193715
10 -0.08295254 52380 29700 5801220 5477068 0.944123477
11 -0.152637436 52380 28620 4686120 4215654 0.899604364
12 43700 23460 0 0 0
13 -0.013033518 111356 64288 7532028 7464289 0.991006539
14 0.117305911 100744 61680 7243288 7856848 1.084707387
15 -0.042007531 111356 65436 15810256 15356540 0.971302425
16 -0.163790541 88464 51984 10964064 9787363 0.892676566
17 0.225577615 61152 35568 8196240 9583415 1.169245288
18 -0.13753472 52920 29160 7829460 7117537 0.909071251
325 0.267479321 60528 35568 7938528 9555629 1.203702878
326 0.843474055 71600 40812 7255944 13019818 1.794365833

Total number of rows: 2592

Table truncated, full table size 122 Kbytes.




Supplementary data files not provided

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