|
| Status |
Public on Apr 06, 2007 |
| Title |
Animal 2 control |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
Reference RNA
|
| Organism |
synthetic construct |
| Characteristics |
Vector RNA. Hybridizes to all spots evenly
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RT on empty pT7T3Pac vector
|
| Label |
Cy3
|
| Label protocol |
indirect labeling protocol
|
| |
|
| Channel 2 |
| Source name |
Animal 2 control
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain:Sprague-Dawley, Gender:Male
Liver section removed by partial hepatectomy (t=0).
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isolated using TRIzol reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions.
|
| Label |
Cy5
|
| Label protocol |
indirect labeling protocol
|
| |
|
| |
| Hybridization protocol |
Reference and experimental probes were combined and competitively hybridized to microarrays for 18 hours at 37C.
|
| Scan protocol |
Slides were scanned using ScanArray 5000 fluorescent scanner (GSI Lumonics, Billerica, MA). The resulting images were quantified using ScanArray Express v2.2 software with the Adaptive Threshold segmentation (GSI Lumonics, Billerica, MA).
|
| Description |
NA
|
| Data processing |
Raw quantitated array data was normalized using the print-tip lowess and scale normalization algorithms
|
| |
|
| Submission date |
Mar 31, 2007 |
| Last update date |
Apr 05, 2007 |
| Contact name |
Egle Juskeviciute |
| Organization name |
Thomas Jefferson University
|
| Department |
Pathology
|
| Street address |
1020 Locust st. JAH 527
|
| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19107 |
| Country |
USA |
| |
|
| Platform ID |
GPL5051 |
| Series (1) |
| GSE7415 |
Partial hepatectomy 1, 2, 4, 6h |
|
