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Sample GSM181265 Query DataSets for GSM181265
Status Public on Apr 11, 2007
Title cy3:SHR treated w/ nifedipine, biological rep 1g; cy5:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from SHR rat treated w/ nifedipine
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 145+/-9 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE -(log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed
INV_VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash

Data table
ID_REF VALUE R G Rb Gb FLAGGED INV_VALUE
1 1.10081 399.2917 693.9583 63 61 0 -1.100813667
2 -0.324546 128.2903 107.8065 62 58 1 0.324546217
3 -0.122729 99.1129 101.7419 61 56 0 0.122728604
4 0.16034 107.8214 123.125 62 57 0 -0.160340134
5 0.257124 84.96825 110.4921 59 56 0 -0.257123876
6 0.0412141 91.75862 105.6897 59 56 0 -0.04121408
7 2.81568 80.68966 680.1897 59 57 1 -2.815678006
8 -0.242385 96.15789 98.12281 61 59 0 0.242384978
9 -0.412171 90.87273 90.81818 60 60 0 0.412171006
10 -0.287118 205.6842 139.386 61 60 0 0.287118087
11 -0.142908 90.23636 97.18182 61 58 0 0.142907618
24 -0.181227 84.30508 93.61017 61.5 61 0 0.181226859
25 -0.403809 596.3729 227.0678 62 61 0 0.403809433
26 0.0130221 90.05263 106.5088 61 61 0 -0.013022056
27 -0.122925 110.15 114 61 62 0 0.122924739
28 2.92176 83.59649 776.1579 61 61 0 -2.921762028
29 0.144313 270.9138 222.2586 61 62 0 -0.144313353
30 0.0206104 94.45 110.95 60 61 0 -0.020610375
31 0.0398188 137.5254 139.3051 60 62 0 -0.039818788
32 0.0899597 73.98214 92.23214 61 62 0 -0.089959701

Total number of rows: 21544

Table truncated, full table size 1117 Kbytes.




Supplementary file Size Download File type/resource
GSM181265.txt.gz 5.0 Mb (ftp)(http) TXT

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