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Sample GSM183793 Query DataSets for GSM183793
Status Public on Jun 05, 2007
Title Lymphoma_TKO_1 (GPL2884)
Sample type genomic
 
Channel 1
Source name Atm-/-,mTerc-/-,p53-/- mouse lymphoma
Organism Mus musculus
Characteristics Strain:C57BL/6; lymphoma
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy3, cy5
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
Channel 2
Source name normal mouse reference
Organism Mus musculus
Characteristics Strain:C57BL/6
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy5, cy3
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
 
Hybridization protocol Genomic DNA hybridization to Agilent CGH arrays were performed as per manufacturer’s protocol (http://www.agilent.com)
Scan protocol Scanning was performed as per manufacturer's protocol (http://www.agilent.com)
Description Lymphoma samples from Atm-/-, mTerc-/-, p53-/- triple knock-out mice are compared to reference DNA from healthy mice of the same line.
Data processing LOWESS normalized, background subtracted data obtained from log2 (test/reference). Agilent software was used.
 
Submission date Apr 24, 2007
Last update date Sep 14, 2007
Contact name bin feng
Organization name dfci
Street address 44 binney street
City boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL2884
Series (2)
GSE7600 Atm-/-,mTerc-/-,p53-/- triple knock-out lymphoma vs normal mouse DNA (GPL2884)
GSE7615 Cancer Process Study

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (test/reference)

Data table
ID_REF VALUE
26186 -0.2564977
22240 -0.2030302
19370 -0.09508473
31487 -0.1014635
38261 -0.2875722
5475 -0.2625888
1859 -0.384624
3325 -0.2317954
1899 -0.1244466
13184 -0.1997261
27786 -0.01523646
26199 -0.03374047
32918 -0.1462906
12706 -0.1840369
12812 -0.1750862
39069 -0.2675639
39829 -0.04624169
3177 -0.1135647
31446 -0.184488
7613 -0.1874589

Total number of rows: 42090

Table truncated, full table size 670 Kbytes.




Supplementary file Size Download File type/resource
GSM183793_US22502705_251349010225_S01_44k_CGH_0605.txt.gz 12.5 Mb (ftp)(http) TXT
GSM183793_US22502705_251349010230_S01_44k_CGH_0605.txt.gz 12.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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