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Sample GSM183795 Query DataSets for GSM183795
Status Public on Jun 05, 2007
Title Lymphoma_TKO_3 (GPL2884)
Sample type genomic
 
Channel 1
Source name Atm-/-,mTerc-/-,p53-/- mouse lymphoma
Organism Mus musculus
Characteristics Strain:C57BL/6; lymphoma
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy3, cy5
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
Channel 2
Source name normal mouse reference
Organism Mus musculus
Characteristics Strain:C57BL/6
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy5, cy3
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
 
Hybridization protocol Genomic DNA hybridization to Agilent CGH arrays were performed as per manufacturer’s protocol (http://www.agilent.com)
Scan protocol Scanning was performed as per manufacturer's protocol (http://www.agilent.com)
Description Lymphoma samples from Atm-/-, mTerc-/-, p53-/- triple knock-out mice are compared to reference DNA from healthy mice of the same line.
Data processing LOWESS normalized, background subtracted data obtained from log2 (test/reference). Agilent software was used.
 
Submission date Apr 24, 2007
Last update date Sep 14, 2007
Contact name bin feng
Organization name dfci
Street address 44 binney street
City boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL2884
Series (2)
GSE7600 Atm-/-,mTerc-/-,p53-/- triple knock-out lymphoma vs normal mouse DNA (GPL2884)
GSE7615 Cancer Process Study

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (test/reference)

Data table
ID_REF VALUE
26186 -0.460679
22240 -0.2542828
19370 -0.3024291
31487 -0.463085
38261 -0.196117
5475 -0.1697276
1859 -0.2547314
3325 -0.3019392
1899 -0.2629097
13184 -0.2507313
27786 -0.3050863
26199 -0.249909
32918 -0.176194
12706 -0.2438252
12812 -0.2115244
39069 -0.2196486
39829 -0.2615737
3177 -0.2662539
31446 -0.5645946
7613 -0.2391047

Total number of rows: 42090

Table truncated, full table size 659 Kbytes.




Supplementary file Size Download File type/resource
GSM183795_US22502705_251349010194_S01_44k_CGH_0605.txt.gz 12.4 Mb (ftp)(http) TXT
GSM183795_US22502705_251349010223_S01_44k_CGH_0605.txt.gz 12.5 Mb (ftp)(http) TXT
Processed data included within Sample table

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