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| Status |
Public on Jun 05, 2007 |
| Title |
Lymphoma_TKO_4 (GPL2884) |
| Sample type |
genomic |
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| Channel 1 |
| Source name |
Atm-/-,mTerc-/-,p53-/- mouse lymphoma
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| Organism |
Mus musculus |
| Characteristics |
Strain:C57BL/6; lymphoma
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
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| Label |
cy3, cy5
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| Label protocol |
Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
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| Channel 2 |
| Source name |
normal mouse reference
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| Organism |
Mus musculus |
| Characteristics |
Strain:C57BL/6
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
|
| Label |
cy5, cy3
|
| Label protocol |
Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
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| Hybridization protocol |
Genomic DNA hybridization to Agilent CGH arrays were performed as per manufacturer’s protocol (http://www.agilent.com)
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| Scan protocol |
Scanning was performed as per manufacturer's protocol (http://www.agilent.com)
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| Description |
Lymphoma samples from Atm-/-, mTerc-/-, p53-/- triple knock-out mice are compared to reference DNA from healthy mice of the same line.
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| Data processing |
LOWESS normalized, background subtracted data obtained from log2 (test/reference). Agilent software was used.
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| Submission date |
Apr 24, 2007 |
| Last update date |
Sep 14, 2007 |
| Contact name |
bin feng |
| Organization name |
dfci
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| Street address |
44 binney street
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| City |
boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
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| Platform ID |
GPL2884 |
| Series (2) |
| GSE7600 |
Atm-/-,mTerc-/-,p53-/- triple knock-out lymphoma vs normal mouse DNA (GPL2884) |
| GSE7615 |
Cancer Process Study |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
normalized log2 ratio (test/reference) |
| Data table |
| ID_REF |
VALUE |
| 26186 |
0.07687104 |
| 22240 |
0.2120277 |
| 19370 |
0.1611033 |
| 31487 |
0.1195328 |
| 38261 |
0.2870749 |
| 5475 |
0.02784665 |
| 1859 |
0.1342733 |
| 3325 |
-0.3130032 |
| 1899 |
-0.3692646 |
| 13184 |
-0.2584555 |
| 27786 |
0.1347289 |
| 26199 |
-0.03352441 |
| 32918 |
0.09279354 |
| 12706 |
-0.06095833 |
| 12812 |
-0.1487463 |
| 39069 |
0.3085573 |
| 39829 |
-0.1314171 |
| 3177 |
-0.3451291 |
| 31446 |
0.1138781 |
| 7613 |
0.2283496 |
Total number of rows: 42090
Table truncated, full table size 669 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM183796_US22502705_251349010184_S01_44k_CGH_0605.txt.gz |
12.6 Mb |
(ftp)(http) |
TXT |
| GSM183796_US22502705_251349010229_S01_44k_CGH_0605.txt.gz |
12.6 Mb |
(ftp)(http) |
TXT |
| Processed data included within Sample table |
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