 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jun 05, 2007 |
| Title |
Lymphoma_TKO_8 (GPL2884) |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Atm-/-,mTerc-/-,p53-/- mouse lymphoma
|
| Organism |
Mus musculus |
| Characteristics |
Strain:C57BL/6; lymphoma
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
|
| Label |
cy3, cy5
|
| Label protocol |
Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
|
| |
|
| Channel 2 |
| Source name |
normal mouse reference
|
| Organism |
Mus musculus |
| Characteristics |
Strain:C57BL/6
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
|
| Label |
cy5, cy3
|
| Label protocol |
Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
|
| |
|
| |
| Hybridization protocol |
Genomic DNA hybridization to Agilent CGH arrays were performed as per manufacturer’s protocol (http://www.agilent.com)
|
| Scan protocol |
Scanning was performed as per manufacturer's protocol (http://www.agilent.com)
|
| Description |
Lymphoma samples from Atm-/-, mTerc-/-, p53-/- triple knock-out mice are compared to reference DNA from healthy mice of the same line.
|
| Data processing |
LOWESS normalized, background subtracted data obtained from log2 (test/reference). Agilent software was used.
|
| |
|
| Submission date |
Apr 24, 2007 |
| Last update date |
Sep 14, 2007 |
| Contact name |
bin feng |
| Organization name |
dfci
|
| Street address |
44 binney street
|
| City |
boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
|
| Platform ID |
GPL2884 |
| Series (2) |
| GSE7600 |
Atm-/-,mTerc-/-,p53-/- triple knock-out lymphoma vs normal mouse DNA (GPL2884) |
| GSE7615 |
Cancer Process Study |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
normalized log2 ratio (test/reference) |
| Data table |
| ID_REF |
VALUE |
| 26186 |
-0.1975391 |
| 22240 |
-0.1615827 |
| 19370 |
-0.2619975 |
| 31487 |
-0.095325 |
| 38261 |
-0.1790854 |
| 5475 |
-0.3168235 |
| 1859 |
-0.3787188 |
| 3325 |
-0.2308558 |
| 1899 |
0.01631052 |
| 13184 |
-0.2345728 |
| 27786 |
-0.04169252 |
| 26199 |
-0.2721631 |
| 32918 |
-0.06295769 |
| 12706 |
-0.2135023 |
| 12812 |
-0.3364239 |
| 39069 |
-0.2615537 |
| 39829 |
-0.3186275 |
| 3177 |
-0.2431173 |
| 31446 |
-0.1517467 |
| 7613 |
-0.2000789 |
Total number of rows: 42090
Table truncated, full table size 668 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM183800_US22502705_251349010215_S01_44k_CGH_0605.txt.gz |
12.5 Mb |
(ftp)(http) |
TXT |
| GSM183800_US22502705_251349010221_S01_44k_CGH_0605.txt.gz |
12.5 Mb |
(ftp)(http) |
TXT |
| Processed data included within Sample table |
|
|
|
|
 |
