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Sample GSM183805 Query DataSets for GSM183805
Status Public on Jun 05, 2007
Title Lymphoma_TKO_13 (GPL2884)
Sample type genomic
 
Channel 1
Source name Atm-/-,mTerc-/-,p53-/- mouse lymphoma
Organism Mus musculus
Characteristics Strain:C57BL/6; lymphoma
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy3, cy5
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
Channel 2
Source name normal mouse reference
Organism Mus musculus
Characteristics Strain:C57BL/6
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy5, cy3
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
 
Hybridization protocol Genomic DNA hybridization to Agilent CGH arrays were performed as per manufacturer’s protocol (http://www.agilent.com)
Scan protocol Scanning was performed as per manufacturer's protocol (http://www.agilent.com)
Description Lymphoma samples from Atm-/-, mTerc-/-, p53-/- triple knock-out mice are compared to reference DNA from healthy mice of the same line.
Data processing LOWESS normalized, background subtracted data obtained from log2 (test/reference). Agilent software was used.
 
Submission date Apr 24, 2007
Last update date Sep 14, 2007
Contact name bin feng
Organization name dfci
Street address 44 binney street
City boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL2884
Series (2)
GSE7600 Atm-/-,mTerc-/-,p53-/- triple knock-out lymphoma vs normal mouse DNA (GPL2884)
GSE7615 Cancer Process Study

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (test/reference)

Data table
ID_REF VALUE
26186 -0.1137518
22240 0.005009658
19370 -0.2716796
31487 -0.1351646
38261 -0.1067536
5475 0.03806482
1859 0.09070437
3325 0.1828542
1899 0.07415069
13184 -0.2530256
27786 -0.06305622
26199 -0.2724765
32918
12706 0.1956619
12812 -0.10479
39069 -0.1792901
39829 -0.2617005
3177 0.08598173
31446 -0.3656847
7613 0.1567969

Total number of rows: 42090

Table truncated, full table size 671 Kbytes.




Supplementary file Size Download File type/resource
GSM183805_US22502705_251349010187_S01_44k_CGH_0605.txt.gz 12.5 Mb (ftp)(http) TXT
GSM183805_US22502705_251349010228_S01_44k_CGH_0605.txt.gz 12.5 Mb (ftp)(http) TXT
Processed data included within Sample table

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