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Sample GSM183806 Query DataSets for GSM183806
Status Public on Jun 05, 2007
Title Lymphoma_TKO_14 (GPL2884)
Sample type genomic
 
Channel 1
Source name Atm-/-,mTerc-/-,p53-/- mouse lymphoma
Organism Mus musculus
Characteristics Strain:C57BL/6; lymphoma
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy3, cy5
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
Channel 2
Source name normal mouse reference
Organism Mus musculus
Characteristics Strain:C57BL/6
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy5, cy3
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
 
Hybridization protocol Genomic DNA hybridization to Agilent CGH arrays were performed as per manufacturer’s protocol (http://www.agilent.com)
Scan protocol Scanning was performed as per manufacturer's protocol (http://www.agilent.com)
Description Lymphoma samples from Atm-/-, mTerc-/-, p53-/- triple knock-out mice are compared to reference DNA from healthy mice of the same line.
Data processing LOWESS normalized, background subtracted data obtained from log2 (test/reference). Agilent software was used.
 
Submission date Apr 24, 2007
Last update date Sep 14, 2007
Contact name bin feng
Organization name dfci
Street address 44 binney street
City boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL2884
Series (2)
GSE7600 Atm-/-,mTerc-/-,p53-/- triple knock-out lymphoma vs normal mouse DNA (GPL2884)
GSE7615 Cancer Process Study

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (test/reference)

Data table
ID_REF VALUE
26186 -0.1714767
22240 -0.135698
19370 0.0423516
31487 0.0017527
38261 -0.1446396
5475 -0.05997373
1859 -0.2450323
3325 0.1114932
1899 0.4568059
13184 -0.2532349
27786 -0.1522527
26199 -0.3744152
32918 -0.1314542
12706 -0.02370158
12812 -0.1403864
39069 -0.08736257
39829 -0.2772259
3177 -0.3825484
31446 -0.3370174
7613 -0.2354908

Total number of rows: 42090

Table truncated, full table size 661 Kbytes.




Supplementary file Size Download File type/resource
GSM183806_US22502705_251349010216_S01_44k_CGH_0605.txt.gz 12.6 Mb (ftp)(http) TXT
GSM183806_US22502705_251349010226_S01_44k_CGH_0605.txt.gz 12.5 Mb (ftp)(http) TXT
Processed data included within Sample table

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