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Sample GSM183807 Query DataSets for GSM183807
Status Public on Jun 05, 2007
Title Lymphoma_TKO_15 (GPL2884)
Sample type genomic
 
Channel 1
Source name Atm-/-,mTerc-/-,p53-/- mouse lymphoma
Organism Mus musculus
Characteristics Strain:C57BL/6; lymphoma
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy3, cy5
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
Channel 2
Source name normal mouse reference
Organism Mus musculus
Characteristics Strain:C57BL/6
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy5, cy3
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
 
Hybridization protocol Genomic DNA hybridization to Agilent CGH arrays were performed as per manufacturer’s protocol (http://www.agilent.com)
Scan protocol Scanning was performed as per manufacturer's protocol (http://www.agilent.com)
Description Lymphoma samples from Atm-/-, mTerc-/-, p53-/- triple knock-out mice are compared to reference DNA from healthy mice of the same line.
Data processing LOWESS normalized, background subtracted data obtained from log2 (test/reference). Agilent software was used.
 
Submission date Apr 24, 2007
Last update date Sep 14, 2007
Contact name bin feng
Organization name dfci
Street address 44 binney street
City boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL2884
Series (2)
GSE7600 Atm-/-,mTerc-/-,p53-/- triple knock-out lymphoma vs normal mouse DNA (GPL2884)
GSE7615 Cancer Process Study

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (test/reference)

Data table
ID_REF VALUE
26186 -0.1331948
22240 0.1996533
19370 -0.05133904
31487 -0.04048441
38261 0.2040203
5475 -0.1705018
1859 -0.006358142
3325 -0.2273137
1899 -0.3091522
13184 -0.05799386
27786 -0.1255493
26199 -0.1112439
32918
12706 -0.1124866
12812 -0.0992376
39069 -0.004770893
39829 0.0126181
3177 -0.1584632
31446 -0.2312193
7613 0.09257482

Total number of rows: 42090

Table truncated, full table size 679 Kbytes.




Supplementary file Size Download File type/resource
GSM183807_US22502705_251349010134_S01_44k_CGH_0605.txt.gz 12.5 Mb (ftp)(http) TXT
GSM183807_US22502705_251349010154_S01_44k_CGH_0605.txt.gz 12.5 Mb (ftp)(http) TXT
Processed data included within Sample table

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