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Sample GSM183811 Query DataSets for GSM183811
Status Public on Jun 05, 2007
Title Lymphoma_TKO_19 (GPL2884)
Sample type genomic
 
Channel 1
Source name Atm-/-,mTerc-/-,p53-/- mouse lymphoma
Organism Mus musculus
Characteristics Strain:C57BL/6; lymphoma
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy3, cy5
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
Channel 2
Source name normal mouse reference
Organism Mus musculus
Characteristics Strain:C57BL/6
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy5, cy3
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
 
Hybridization protocol Genomic DNA hybridization to Agilent CGH arrays were performed as per manufacturer’s protocol (http://www.agilent.com)
Scan protocol Scanning was performed as per manufacturer's protocol (http://www.agilent.com)
Description Lymphoma samples from Atm-/-, mTerc-/-, p53-/- triple knock-out mice are compared to reference DNA from healthy mice of the same line.
Data processing LOWESS normalized, background subtracted data obtained from log2 (test/reference). Agilent software was used.
 
Submission date Apr 24, 2007
Last update date Sep 14, 2007
Contact name bin feng
Organization name dfci
Street address 44 binney street
City boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL2884
Series (2)
GSE7600 Atm-/-,mTerc-/-,p53-/- triple knock-out lymphoma vs normal mouse DNA (GPL2884)
GSE7615 Cancer Process Study

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (test/reference)

Data table
ID_REF VALUE
26186 -0.09006532
22240 -0.06287936
19370 -0.1773455
31487 -0.05278171
38261 -0.1551172
5475 -0.1668389
1859 -0.1243133
3325 -0.1453188
1899 -0.06746601
13184 -0.2608622
27786 -0.2192652
26199 -0.1623933
32918
12706 -0.07730523
12812 -0.1599475
39069 -0.1132312
39829 -0.1649958
3177 -0.1675237
31446 -0.2317151
7613 -0.1090815

Total number of rows: 42090

Table truncated, full table size 667 Kbytes.




Supplementary file Size Download File type/resource
GSM183811_US22502705_251349010155_S01_44k_CGH_0605.txt.gz 12.5 Mb (ftp)(http) TXT
GSM183811_US22502705_251349010188_S01_44k_CGH_0605.txt.gz 12.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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