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Sample GSM183812 Query DataSets for GSM183812
Status Public on Jun 05, 2007
Title Lymphoma_TKO_20 (GPL2884)
Sample type genomic
 
Channel 1
Source name Atm-/-,mTerc-/-,p53-/- mouse lymphoma
Organism Mus musculus
Characteristics Strain:C57BL/6; lymphoma
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy3, cy5
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
Channel 2
Source name normal mouse reference
Organism Mus musculus
Characteristics Strain:C57BL/6
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy5, cy3
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
 
Hybridization protocol Genomic DNA hybridization to Agilent CGH arrays were performed as per manufacturer’s protocol (http://www.agilent.com)
Scan protocol Scanning was performed as per manufacturer's protocol (http://www.agilent.com)
Description Lymphoma samples from Atm-/-, mTerc-/-, p53-/- triple knock-out mice are compared to reference DNA from healthy mice of the same line.
Data processing LOWESS normalized, background subtracted data obtained from log2 (test/reference). Agilent software was used.
 
Submission date Apr 24, 2007
Last update date Sep 14, 2007
Contact name bin feng
Organization name dfci
Street address 44 binney street
City boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL2884
Series (2)
GSE7600 Atm-/-,mTerc-/-,p53-/- triple knock-out lymphoma vs normal mouse DNA (GPL2884)
GSE7615 Cancer Process Study

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (test/reference)

Data table
ID_REF VALUE
26186 -0.01810621
22240 0.0693885
19370 0.04216546
31487 0.1495351
38261 -0.07867291
5475 -0.02396556
1859 -0.1378418
3325 0.4136336
1899 0.08427619
13184 -0.2743029
27786 -0.03412251
26199 -0.3695994
32918
12706 0.05955026
12812 -0.2167992
39069 -0.06335686
39829 -0.1382718
3177 -0.391839
31446 -0.5506513
7613 -0.2456131

Total number of rows: 42090

Table truncated, full table size 672 Kbytes.




Supplementary file Size Download File type/resource
GSM183812_US22502705_251349010176_S01_44k_CGH_0605.txt.gz 12.4 Mb (ftp)(http) TXT
GSM183812_US22502705_251349010200_S01_44k_CGH_0605.txt.gz 12.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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