|
| Status |
Public on Dec 19, 2016 |
| Title |
GNV019_CL3 |
| Sample type |
genomic |
| |
|
| Source name |
Glioblastoma_subclone
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: cultured glioblastoma
culture/clone_id: GNV019_CL3
sample type: subclones derived from a parental culture
passage: 5+8
|
| Treatment protocol |
No treatment
|
| Growth protocol |
Conditions for cell expansion
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
AllPrep DNA/RNA Mini Kit (Qiagen)
|
| Label |
biotin/dinitrophenyl
|
| Label protocol |
C-Bio and A-DNP
|
| |
|
| Hybridization protocol |
Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
|
| Scan protocol |
Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
|
| Description |
Genomic DNA extracted from primary glioblastoma cells GNV019 was genotyped using Infinium HumanHap610-Quadv1_B Genotyping BeadChips (Illumina).
|
| Data processing |
Genomic DNA extracted from glioblastoma primary cells were genotyped using Infinium HumanHap550-2v3 and Human610-Quadv1_B Genotyping BeadChips (Illumina). Datasets from both arrays were merged according to Illuminas report Combining and Analyzing Data from Different BeadChips for integrated processing and analysis using GenomeStudio
Sample data table contains Genotype call, GC_SCORE, Theta, R, B_Allele_Freq, Log_R_Ratio exported from GenomeStudio
|
| |
|
| Submission date |
Sep 04, 2015 |
| Last update date |
Dec 19, 2016 |
| Contact name |
Roman Reinartz |
| E-mail(s) |
roman.reinartz@uni-bonn.de
|
| Organization name |
University of Bonn
|
| Department |
Institute of Reconstructive Neurobiology
|
| Lab |
Stem Cell Pathologies Group
|
| Street address |
Sigmund Freud Strasse 25
|
| City |
Bonn |
| ZIP/Postal code |
53127 |
| Country |
Germany |
| |
|
| Platform ID |
GPL8887 |
| Series (1) |
| GSE72732 |
Functional Subclone Profiling for Prediction of Treatment-Induced Intratumor Population Shifts and Discovery of Rational Drug Combinations in Human Glioblastoma [SNP] |
|
