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Sample GSM189791 Query DataSets for GSM189791
Status Public on May 18, 2007
Title Hypoxic BL6 array 2
Sample type RNA
 
Source name Whole lung homogenate
Organism Mus musculus
Characteristics Whole lung homogenate from C57/BL6 mice exposed to 4 weeks hypobaric hypoxia (50 kPa)
Extracted molecule total RNA
Extraction protocol right lung was removed immediately after sacrifice, snap frozen, and later converted to RNA using Qiagen rnEasy columns.
Label Biotin
Label protocol following Affymetrix GeneChip Expression Analysis Manual
 
Hybridization protocol following Affymetrix GeneChip Expression Analysis Manual
Scan protocol following Affymetrix GeneChip Expression Analysis Manual
Description Whole lung homogenate from C57/BL6 mice exposed to 4 weeks hypobaric hypoxia (50 kPa)
Data processing Affymetrix chp and cel files
 
Submission date May 16, 2007
Last update date Aug 28, 2018
Contact name James West
E-mail(s) j.west@vanderbilt.edu
Organization name Vanderbilt University
Department Medicine
Lab Pulmonary
Street address 4200 E 9TH Ave, Box B133
City Nashville
State/province TN
ZIP/Postal code 37201
Country USA
 
Platform ID GPL1261
Series (1)
GSE7823 Murine Pulmonary Response to Chronic Hypoxia is Strain Specific
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Expression level
ABS_CALL present or absent call
DETECTION P-VALUE p value for present or absent

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 277.889 P 0.000662269
AFFX-BioB-M_at 547.866 P 6.02111e-05
AFFX-BioB-3_at 301.304 P 0.000258358
AFFX-BioC-5_at 1093.75 P 4.42873e-05
AFFX-BioC-3_at 958.787 P 5.16732e-05
AFFX-BioDn-5_at 2354.57 P 4.42873e-05
AFFX-BioDn-3_at 4511.76 P 4.42873e-05
AFFX-CreX-5_at 10834.6 P 4.42873e-05
AFFX-CreX-3_at 15621.6 P 4.42873e-05
AFFX-DapX-5_at 24.4091 A 0.102165
AFFX-DapX-M_at 2.69736 A 0.904333
AFFX-DapX-3_at 3.05159 A 0.987453
AFFX-LysX-5_at 14.1447 A 0.131361
AFFX-LysX-M_at 3.64454 A 0.891021
AFFX-LysX-3_at 20.6796 P 0.0464816
AFFX-PheX-5_at 17.2911 A 0.0894781
AFFX-PheX-M_at 1.79643 A 0.971543
AFFX-PheX-3_at 26.2451 A 0.39692
AFFX-ThrX-5_at 3.48552 A 0.876428
AFFX-ThrX-M_at 12.704 A 0.287743

Total number of rows: 45101

Table truncated, full table size 1395 Kbytes.




Supplementary file Size Download File type/resource
GSM189791.CEL.gz 6.1 Mb (ftp)(http) CEL
GSM189791.CHP.gz 11.1 Mb (ftp)(http) CHP
Processed data provided as supplementary file

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