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Sample GSM189797 Query DataSets for GSM189797
Status Public on May 18, 2007
Title Normoxic BL6 array 1
Sample type RNA
 
Source name Whole lung homogenate
Organism Mus musculus
Characteristics Whole lung homogenate from BL6 mice kept at Denver altitude (85 kPa) for 4 weeks.
Extracted molecule total RNA
Extraction protocol right lung was removed immediately after sacrifice, snap frozen, and later converted to RNA using Qiagen rnEasy columns.
Label Biotin
Label protocol following Affymetrix GeneChip Expression Analysis Manual
 
Hybridization protocol following Affymetrix GeneChip Expression Analysis Manual
Scan protocol following Affymetrix GeneChip Expression Analysis Manual
Description Whole lung homogenate from BL6 mice kept at Denver altitude (85 kPa) for 4 weeks.
Data processing Affymetrix chp and cel files
 
Submission date May 16, 2007
Last update date Aug 28, 2018
Contact name James West
E-mail(s) j.west@vanderbilt.edu
Organization name Vanderbilt University
Department Medicine
Lab Pulmonary
Street address 4200 E 9TH Ave, Box B133
City Nashville
State/province TN
ZIP/Postal code 37201
Country USA
 
Platform ID GPL1261
Series (1)
GSE7823 Murine Pulmonary Response to Chronic Hypoxia is Strain Specific
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Expression level
ABS_CALL present or absent call
DETECTION P-VALUE p value for present or absent

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 156.394 P 0.00159257
AFFX-BioB-M_at 259.327 P 0.000126798
AFFX-BioB-3_at 158.126 P 0.000224668
AFFX-BioC-5_at 404.183 P 6.02111e-05
AFFX-BioC-3_at 315.287 P 7.00668e-05
AFFX-BioDn-5_at 7276.13 P 4.42873e-05
AFFX-BioDn-3_at 11594.5 P 4.42873e-05
AFFX-CreX-5_at 15049.8 P 4.42873e-05
AFFX-CreX-3_at 18296.1 P 4.42873e-05
AFFX-DapX-5_at 2.53631 A 0.699394
AFFX-DapX-M_at 16.4727 A 0.262809
AFFX-DapX-3_at 3.57733 A 0.897835
AFFX-LysX-5_at 7.11606 A 0.544587
AFFX-LysX-M_at 3.44132 A 0.834139
AFFX-LysX-3_at 4.17278 A 0.470241
AFFX-PheX-5_at 5.13323 A 0.672921
AFFX-PheX-M_at 1.56678 A 0.984817
AFFX-PheX-3_at 16.3329 A 0.227636
AFFX-ThrX-5_at 4.21938 A 0.686277
AFFX-ThrX-M_at 1.92571 A 0.737191

Total number of rows: 45101

Table truncated, full table size 1397 Kbytes.




Supplementary file Size Download File type/resource
GSM189797.CEL.gz 6.3 Mb (ftp)(http) CEL
GSM189797.CHP.gz 11.3 Mb (ftp)(http) CHP
Processed data provided as supplementary file

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