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Sample GSM189798 Query DataSets for GSM189798
Status Public on May 18, 2007
Title Normoxic FVB/N array 1
Sample type RNA
 
Source name Whole lung homogenate
Organism Mus musculus
Characteristics Whole lung homogenate from FVB/N mice kept at Denver altitude (85 kPa) for 4 weeks.
Extracted molecule total RNA
Extraction protocol right lung was removed immediately after sacrifice, snap frozen, and later converted to RNA using Qiagen rnEasy columns.
Label Biotin
Label protocol following Affymetrix GeneChip Expression Analysis Manual
 
Hybridization protocol following Affymetrix GeneChip Expression Analysis Manual
Scan protocol following Affymetrix GeneChip Expression Analysis Manual
Description Whole lung homogenate from FVB/N mice kept at Denver altitude (85 kPa) for 4 weeks.
Data processing Affymetrix chp and cel files
 
Submission date May 16, 2007
Last update date Aug 28, 2018
Contact name James West
E-mail(s) j.west@vanderbilt.edu
Organization name Vanderbilt University
Department Medicine
Lab Pulmonary
Street address 4200 E 9TH Ave, Box B133
City Nashville
State/province TN
ZIP/Postal code 37201
Country USA
 
Platform ID GPL1261
Series (1)
GSE7823 Murine Pulmonary Response to Chronic Hypoxia is Strain Specific
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Expression level
ABS_CALL present or absent call
DETECTION P-VALUE p value for present or absent

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 111.837 P 0.0044838
AFFX-BioB-M_at 225.416 P 0.000340305
AFFX-BioB-3_at 162.392 P 0.00141043
AFFX-BioC-5_at 379.137 P 0.000195116
AFFX-BioC-3_at 301.2 P 0.000169227
AFFX-BioDn-5_at 6522.79 P 4.42873e-05
AFFX-BioDn-3_at 12894.2 P 4.42873e-05
AFFX-CreX-5_at 14684 P 4.42873e-05
AFFX-CreX-3_at 16530.8 P 4.42873e-05
AFFX-DapX-5_at 9.97453 A 0.60308
AFFX-DapX-M_at 14.0915 A 0.5
AFFX-DapX-3_at 2.12496 A 0.963431
AFFX-LysX-5_at 15.9217 A 0.216524
AFFX-LysX-M_at 23.8543 A 0.672921
AFFX-LysX-3_at 15.7297 A 0.313723
AFFX-PheX-5_at 2.954 A 0.969024
AFFX-PheX-M_at 3.17593 A 0.932322
AFFX-PheX-3_at 29.6711 A 0.368438
AFFX-ThrX-5_at 5.00519 A 0.843268
AFFX-ThrX-M_at 11.9048 A 0.455413

Total number of rows: 45101

Table truncated, full table size 1390 Kbytes.




Supplementary file Size Download File type/resource
GSM189798.CEL.gz 6.2 Mb (ftp)(http) CEL
GSM189798.CHP.gz 11.1 Mb (ftp)(http) CHP
Processed data provided as supplementary file

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