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Sample GSM1938910 Query DataSets for GSM1938910
Status Public on May 13, 2016
Title UM_N08_Tumor
Sample type genomic
 
Source name Head and neck squamous cell carcinoma
Organism Homo sapiens
Characteristics turmor stage: II
gender: F
hpv-status: Neg
Extracted molecule genomic DNA
Extraction protocol The tumor DNA was prepared using Qiagen AllPrep DNA/RNA/protein Mini Kit prep and the blood DNA was isolated using the Qiagen QIAamp Blood DNA Mini Kit.
Label biotin(C,G) ; dinitrophenyl (A, T)
Label protocol standard Illumina labelling protocol
 
Hybridization protocol standard Illumina hybridisation protocol
Scan protocol standard Illumina scanning protocol for BeadChip Arrays
Description BT26: UM_N08_Tumor
Data processing The scanned data files were processed by GenomeStudio (Illumina) Genotyping Analysis Modulue (v1.9.4)
Genotype: AA, AB, BB or NC(no call)
 
Submission date Nov 12, 2015
Last update date Jul 15, 2021
Contact name Maureen Sartor
E-mail(s) sartorma@umich.edu
Organization name University of Michigan
Street address 100 Washtenaw Ave.
City Ann Abor
ZIP/Postal code 48109
Country USA
 
Platform ID GPL18900
Series (2)
GSE74949 Subtypes of HPV-positive head and neck cancers are associated with HPV characteristics, copy number variations, PIK3CA mutation, and pathway signatures. [SNP]
GSE74956 Subtypes of HPV-positive head and neck cancers are associated with HPV characteristics, copy number variations, PIK3CA mutation, and pathway signatures.

Supplementary file Size Download File type/resource
GSM1938910_8698503042_R04C02_Grn.idat.gz 4.8 Mb (ftp)(http) IDAT
GSM1938910_8698503042_R04C02_Red.idat.gz 4.8 Mb (ftp)(http) IDAT
Processed data are available on Series record

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