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Sample GSM194381 Query DataSets for GSM194381
Status Public on Mar 05, 2010
Title lung_SqCC-2
Sample type SAGE
Anchor NlaIII
Tag Count 152220
Tag Length 10
 
Source name lung
Organism Homo sapiens
Characteristics Non-small cell lung cancer: invasive squamous cell carcinoma
Extracted molecule polyA RNA
Extraction protocol MicroSAGE protocol: annealing to oligo (dT) magnetic beads
 
Description Biopsy material
 
Submission date May 24, 2007
Last update date Mar 05, 2009
Contact name Kim Marie Lonergan
E-mail(s) klonergan@bccrc.ca
Phone 604-675-8111
Fax 604-675-8185
Organization name British Columbia Cancer Research Centre
Department Cancer Genetics and Developmental Biology
Lab Dr. Wan L Lam
Street address 675 West 10th Avenue
City Vancouver
State/province British Columbia
ZIP/Postal code V5Z 1L3
Country Canada
 
Platform ID GPL4
Series (1)
GSE7898 Expression profiling of early-stage squamous cell non-small cell lung cancer.

Data table header descriptions
TAG tag
COUNT
TPM tags per million

Data table
TAG COUNT TPM
ACTTTTTCAA 1567 10294.31
TACCTGCAGA 1558 10235.19
GTGGCCACGG 1536 10090.66
TAGGTTGTCT 1417 9308.90
TTGGGGTTTC 1369 8993.56
GAAATAAAGC 1203 7903.04
TACCATCAAT 1189 7811.06
AAAAAAAAAA 1179 7745.37
CTGGGTTAAT 970 6372.36
CTTCCTTGCC 966 6346.08
GAGCAGCGCC 940 6175.27
GAGGGAGTTT 921 6050.45
ATAATTCTTT 887 5827.09
GCATAATAGG 863 5669.43
GTTGTGGTTA 859 5643.15
TAATAAAGGT 813 5340.95
CAATAAATGT 803 5275.26
TTCAATAAAA 759 4986.20
TTCATACACC 660 4335.83
AGGGCTTCCA 633 4158.45

Total number of rows: 32496

Table truncated, full table size 585 Kbytes.




Supplementary data files not provided

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