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GEO accession:
Sample GSM194383
Query DataSets for GSM194383
Status
Public on Mar 05, 2010
Title
lung_SqCC-4
Sample type
SAGE
Anchor
NlaIII
Tag Count
176874
Tag Length
10
Source name
lung
Organism
Homo sapiens
Characteristics
Non-small cell lung cancer: invasive squamous cell carcinoma
Extracted molecule
polyA RNA
Extraction protocol
MicroSAGE protocol: annealing to oligo (dT) magnetic beads
Description
Biopsy material
Submission date
May 24, 2007
Last update date
Mar 05, 2009
Contact name
Kim Marie Lonergan
E-mail(s)
klonergan@bccrc.ca
Phone
604-675-8111
Fax
604-675-8185
Organization name
British Columbia Cancer Research Centre
Department
Cancer Genetics and Developmental Biology
Lab
Dr. Wan L Lam
Street address
675 West 10th Avenue
City
Vancouver
State/province
British Columbia
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE7898
Expression profiling of early-stage squamous cell non-small cell lung cancer.
Data table header descriptions
TAG
tag
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
ACTTTTTCAA
1581
8938.57
GTTGTGGTTA
1315
7434.67
TTCAATAAAA
1184
6694.03
TGGAAATGAC
1059
5987.31
TAGGTTGTCT
1052
5947.74
ATGTGAAGAG
999
5648.09
TACCATCAAT
994
5619.82
CTTCCTTGCC
951
5376.71
CTGGGTTAAT
947
5354.09
CCCATCGTCC
917
5184.48
TTGGGGTTTC
905
5116.64
TTCATACACC
903
5105.33
AAAAAAAAAA
841
4754.80
TAATAAAGGT
825
4664.34
TTGGTGAAGG
788
4455.15
TGTGTTGAGA
770
4353.38
TTGGTCCTCT
727
4110.27
ATAATTCTTT
711
4019.81
CACCTAATTG
670
3788.01
CAATAAATGT
653
3691.89
Total number of rows:
39652
Table truncated, full table size
714 Kbytes
.
Supplementary data files not provided
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