|
| Status |
Public on May 30, 2007 |
| Title |
Frozen rectal tumor sample (B338) |
| Sample type |
genomic |
| |
|
| Source name |
Frozen rectal tumor sample (B338)
|
| Organism |
Homo sapiens |
| Characteristics |
gender: F
gender: 70
tissue: rectal carcinoma
tumor stage: T2N0
|
| Treatment protocol |
n.a.
|
| Growth protocol |
n.a.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was isolated with the Genomic Wizard Kit (Promega)
|
| Label |
biotin
|
| Label protocol |
Biotinylated DNA wase prepared according to the standard Affymetrix protocol for Affymetrix 10K SNP arrays
|
| |
|
| Hybridization protocol |
Hybridisation according to the protocol for Affymetrix 10K SNP arrays
|
| Scan protocol |
GeneChips were scanned using the GeneChip® Scanner 3000
|
| Description |
test
|
| Data processing |
Genotypes were scored with the GDAS software (Affymetrix). Copy numbers were consequently computed with dCHIP SNP and CNAG. Samples were normalized against a set of in-house normal reference samples.
|
| |
|
| Submission date |
May 29, 2007 |
| Last update date |
May 29, 2007 |
| Contact name |
Esther Lips |
| E-mail(s) |
e.lips@nki.nl
|
| Phone |
+31-20-5122039
|
| Organization name |
NKI-AVL
|
| Department |
Molecular Pathology
|
| Street address |
Plesmanlaan 121
|
| City |
Amsterdam |
| ZIP/Postal code |
1066 CX |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL2641 |
| Series (2) |
| GSE7946 |
SNP array analysis of chromosomal instability patterns discriminates rectal adenomas from carcinomas |
| GSE12225 |
Integrating chromosomal aberrations and gene expression profiles to dissect rectal cancer |
|
