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Sample GSM2038749 Query DataSets for GSM2038749
Status Public on Jan 20, 2016
Title SJPHALL010
Sample type RNA
 
Source name Leukemia cells
Organism Homo sapiens
Characteristics source: bone marrow
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label Hy5
Label protocol miRCURY Power labeling kit used according to manufacturer's (Exiqon) instructions
 
Hybridization protocol hybridization was done at 56 degrees Celsius for 16 hours followed by washing on an HS Pro instrument from Tecan.
Scan protocol Scanning was performed using an Agilent G2505B scanning system
Description processed signal intensity
Data processing raw counts were processed using the limma package(version 3.6.9) from Bioconductor
 
Submission date Jan 13, 2016
Last update date Jan 20, 2016
Contact name William Evans
E-mail(s) william.evans@stjude.org
Organization name St Jude Children's Research Hospital
Department Pharmaceutical Sciences
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL7722
Series (1)
GSE76849 miRNA from leukemia cells

Data table header descriptions
ID_REF
VALUE processed signal intensity

Data table
ID_REF VALUE
17519 7.317313431
17541 7.399794882
42485 7.275094385
17415 8.103148015
42545 7.374735992
17283 7.284929064
17306 7.532782167
42882 7.192961822
27537 9.191087198
17655 7.394360516
17623 7.341257726
42897 7.438848234
17358 9.036475844
42773 7.295035438
42943 10.64110172
42466 7.677813437
17657 7.255050151
42522 10.94407196
42613 8.066433634
42974 10.34399522

Total number of rows: 1276

Table truncated, full table size 22 Kbytes.




Supplementary file Size Download File type/resource
GSM2038749_SWP000_SWP200_miR10_6148Cv60.gpr.gz 467.6 Kb (ftp)(http) GPR
Processed data included within Sample table

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