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Sample GSM2071282 Query DataSets for GSM2071282
Status Public on Mar 18, 2016
Title small RNA-seq from parietal lobe (ENCLB233ZZZ)
Sample type SRA
 
Source name Homo sapiens parietal lobe tissue male fetal (22 weeks)
Organism Homo sapiens
Characteristics tissue_type: parietal lobe
biomaterial_type: tissue
description: Human fetal parietal lobe
biosample encode accession: ENCBS065RNA (SAMN04284300)
age: 22 week
donor_id: ENCDO065AAA
dev stage: fetal
Sex: male
health state: unknown
lab: Thomas Gingeras, CSHL
link: ENCBS065RNA at ENCODE; https://www.encodeproject.org/ENCBS065RNA/
link: Derived from ENCODE donor ENCDO065AAA; https://www.encodeproject.org/ENCDO065AAA/
link: data sheet; https://www.encodeproject.org/documents/d0dafa6a-87a2-4236-8c10-43d1bafb1530/@@download/attachment/A805058.pdf
link: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244066-50
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/cfb6f485-4507-48d7-8466-78d7349eb0a6/@@download/attachment/SID38462.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR000AFY/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal parietal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
experiment encode accession: ENCSR000AFY
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB233ZZZ
size range: <200
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Feb 24, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE78299 small RNA-seq from parietal lobe (ENCSR000AFY)
Relations
SRA SRX1602980
BioSample SAMN04284300
Named Annotation GSM2071282_ENCFF098KFW_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2071282_ENCFF567GTV_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2071282_ENCFF003RBW_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2071282_ENCFF345KZP_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2071282_ENCFF003RBW_plus_strand_signal_of_all_reads_GRCh38.bigWig 18.5 Mb (ftp)(http) BIGWIG
GSM2071282_ENCFF098KFW_plus_strand_signal_of_unique_reads_GRCh38.bigWig 2.0 Mb (ftp)(http) BIGWIG
GSM2071282_ENCFF270JDP_plus_strand_signal_of_unique_reads_hg19.bigWig 2.0 Mb (ftp)(http) BIGWIG
GSM2071282_ENCFF345KZP_minus_strand_signal_of_unique_reads_GRCh38.bigWig 1.9 Mb (ftp)(http) BIGWIG
GSM2071282_ENCFF500FRR_gene_quantifications_hg19.tsv.gz 273.4 Kb (ftp)(http) TSV
GSM2071282_ENCFF567GTV_minus_strand_signal_of_all_reads_GRCh38.bigWig 18.2 Mb (ftp)(http) BIGWIG
GSM2071282_ENCFF582POC_minus_strand_signal_of_unique_reads_hg19.bigWig 1.9 Mb (ftp)(http) BIGWIG
GSM2071282_ENCFF619LAI_plus_strand_signal_of_all_reads_hg19.bigWig 18.1 Mb (ftp)(http) BIGWIG
GSM2071282_ENCFF888RWL_gene_quantifications_GRCh38.tsv.gz 289.7 Kb (ftp)(http) TSV
GSM2071282_ENCFF943NYM_minus_strand_signal_of_all_reads_hg19.bigWig 18.1 Mb (ftp)(http) BIGWIG
GSM2071282_ENCLB233ZZZ_README.txt.gz 927 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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