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Sample GSM2071344 Query DataSets for GSM2071344
Status Public on Mar 18, 2016
Title single cell RNA-seq from GM12878 (ENCLB206JYT)
Sample type SRA
Source name Homo sapiens GM12878 immortalized cell line
Organism Homo sapiens
Characteristics line: GM12878
biomaterial_type: immortalized cell line
description: Single GM12878 cell, part of a set of 10
biosample encode accession: ENCBS381VEV (SAMN04284362)
age: unknown
dev stage: adult
Sex: female
health state: unknown
lab: Barbara Wold, Caltech
link: ENCBS381VEV at ENCODE;
link: Derived from ENCODE donor ENCDO000AAK;
link: growth protocol;
link: ENCODE dbxrefs Cellosaurus CVCL_7526;
link: Coriell sample source;
Extracted molecule total RNA
Extraction protocol general protocol:
extraction method: None
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
biological replicate number: 1
technical replicate number: 1
description: RNA-seq of a single GM12878 cell
experiment encode accession: ENCSR184CWK
assay title: single cell RNA-seq
assembly: GRCh38, hg19
possible controls: ENCSR673UIY
encode release date: 2014-06-30
lab: Barbara Wold, Caltech
library encode accession: ENCLB206JYT
size range: >200
spikeins used: /references/ENCSR013YHQ/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cells
Data processing See GSM*_README.txt supplementary file linked below
Submission date Feb 24, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE78339 single cell RNA-seq from GM12878 (ENCSR184CWK)
SRA SRX1603039
BioSample SAMN04284362
Named Annotation GSM2071344_ENCFF194IIF_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2071344_ENCFF395PUS_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2071344_ENCFF017RCV_transcript_quantifications_GRCh38.tsv.gz 6.7 Mb (ftp)(http) TSV
GSM2071344_ENCFF097RNQ_signal_of_all_reads_hg19.bigWig 19.8 Mb (ftp)(http) BIGWIG
GSM2071344_ENCFF194IIF_signal_of_unique_reads_GRCh38.bigWig 22.1 Mb (ftp)(http) BIGWIG
GSM2071344_ENCFF320RFW_signal_of_unique_reads_hg19.bigWig 21.1 Mb (ftp)(http) BIGWIG
GSM2071344_ENCFF395PUS_signal_of_all_reads_GRCh38.bigWig 22.0 Mb (ftp)(http) BIGWIG
GSM2071344_ENCFF613BUH_signal_of_unique_reads_hg19.bigWig 22.1 Mb (ftp)(http) BIGWIG
GSM2071344_ENCFF633QJC_signal_of_all_reads_hg19.bigWig 21.8 Mb (ftp)(http) BIGWIG
GSM2071344_ENCFF654CLN_gene_quantifications_hg19.tsv.gz 2.4 Mb (ftp)(http) TSV
GSM2071344_ENCFF671YRD_transcript_quantifications_hg19.tsv.gz 6.5 Mb (ftp)(http) TSV
GSM2071344_ENCFF699SNV_gene_quantifications_GRCh38.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2071344_ENCLB206JYT_README.txt.gz 980 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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