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GEO accession:
Sample GSM21016
Query DataSets for GSM21016
Status
Public on May 02, 2004
Title
Operon apetala1 set1
Sample type
RNA
Channel 1
Source name
apetala1 inflorescences
Organism
Arabidopsis thaliana
Extracted molecule
total RNA
Channel 2
Source name
wild-type inflorescences
Organism
Arabidopsis thaliana
Extracted molecule
total RNA
Description
Comparison of gene expression profiles of wild-type and apetala1 inflorescences.
The data were processed and normalized as described in Wellmer et al. (2004) Plant Cell 16(5).
Submission date
Apr 05, 2004
Last update date
May 27, 2005
Contact name
Frank Wellmer
E-mail(s)
wellmer@caltech.edu
Phone
626-395-8438
Organization name
California Institute of Technology
Department
Biology 156-29
Lab
Meyerowitz
Street address
1200 E. California Blvd.
City
Pasadena
State/province
CA
ZIP/Postal code
91125
Country
USA
Platform ID
GPL1077
Series (2)
GSE1270
Operon array expression profile apetala1
GSE1275
Gene expression profiling of Arabidopsis floral homeotic mutants
Data table header descriptions
ID_REF
Intensity1
Absolute intensity measurement for the mutant sample after background subtraction and normalization
Intensity2
Absolute intensity measurement for the wild-type sample after background subtraction and normalization
P-value
Value describing the confidence that the element's expression ratio reflects a change in expression not due to measurement errors
VALUE
log ratio (log2 of PRE_VALUE)
PRE_VALUE
Normalized signal intensity for the wild-type sample divided by normalized signal intensity for the mutant sample
Data table
ID_REF
Intensity1
Intensity2
P-value
VALUE
PRE_VALUE
A000001_01
2.85688
2.51012
0.89097
-0.1212673
0.91938
A000002_01
1.37008
1.31549
0.99132
0.0067653
1.0047
A000003_01
1.5988
1.35673
0.62069
-0.1714503
0.88795
A000004_01
2.36081
2.80084
0.63609
0.3120033
1.24143
A000005_01
0.81807
0.656
0.77964
-0.2530853
0.8391
A000006_01
4.74294
4.68705
0.93505
0.0483203
1.03406
A000007_01
0.73643
0.41029
0.456
-0.7784823
0.58298
A000008_01
0.02699
0.01691
0.49059
-0.6090463
0.65563
A000009_01
0.03585
0.04332
0.52523
0.3384873
1.26443
A000010_01
0.48627
0.19186
0.00325
-1.2763103
0.41285
A000011_01
0.20721
0.28381
0.41107
0.5193003
1.43326
A000012_01
0.97369
1.07335
0.71465
0.2060053
1.15349
A000013_01
0.68838
0.88142
0.20393
0.4220283
1.33981
A000014_01
0.11311
0.08779
0.36615
-0.3002003
0.81214
A000015_01
2.59104
1.66568
0.206
-0.5720083
0.67268
A000016_01
1.11767
1.05756
0.97336
-0.0143253
0.99012
A000017_01
1.95473
1.94703
0.85803
0.0597293
1.04227
A000018_01
0.01933
0.01179
0.45981
-0.6474673
0.6384
A000019_01
0.20842
0.27844
0.1457
0.4833023
1.39794
A000020_01
0.86366
0.96339
0.5019
0.2230643
1.16721
Total number of rows:
26933
Table truncated, full table size
1382 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM21016.GPR.gz
1.9 Mb
(ftp)
(http)
GPR
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