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Sample GSM210493 Query DataSets for GSM210493
Status Public on Nov 19, 2007
Title CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set04_1
Sample type genomic
 
Channel 1
Source name CD4+ DNAse-treated genomic DNA, replicate #1
Organism Homo sapiens
Characteristics Treatment:DNAse digested
Treatment protocol DNAse digestion
Extracted molecule genomic DNA
Extraction protocol DNAse treated DNA was extracted and amplified.
Label Cy3
Label protocol Sample was labeled by Nimblegen according to their established protocol.
 
Channel 2
Source name CD4+ input genomic DNA, replicate #1
Organism Homo sapiens
Characteristics Treatment:No DNAse
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol Input DNA was extracted.
Label Cy5
Label protocol Sample was labeled by Nimblegen according to their established protocol.
 
 
Hybridization protocol Sample was hybridized by Nimblegen according to their established protocol.
Scan protocol Sample was scanned by Nimblegen according to their established protocol.
Description CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set04_1
Data processing Data were normalized to have median log2 ratio of zero and median absolute deviation (MAD) of one.
 
Submission date Jul 13, 2007
Last update date Aug 14, 2011
Contact name Sean Davis
E-mail(s) sdavis2@mail.nih.gov
Phone 301-435-2652
Organization name National Cancer Institute
Lab Genetics Branch
Street address 37 Convent Drive, Room 6138
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL5536
Series (1)
GSE8486 Whole genome DNAse hypersensitivity in human CD4+ T-cells

Data table header descriptions
ID_REF Feature match id
RED_INTENSITY Red intensity of the original scan (raw data)
GREEN_INTENSITY Green intensity of the original scan (raw data)
VALUE Median centered, MAD scaled value

Data table
ID_REF RED_INTENSITY GREEN_INTENSITY VALUE
52886882 391.67 572.44 -0.0223742515603840
52886883 458 617.89 0.147182155921855
52886884 379.89 593.22 -0.162589837549251
52886885 742.11 914.44 0.33914896147474
52886886 859.33 882.56 0.724961087089732
52886887 444 668 -0.0837501000237531
52886888 530.33 760.67 0.0174229126237920
52886889 610.11 666.44 0.594400780369987
52886890 429 688.56 -0.220760029438999
52886891 440.44 774.56 -0.414312250686809
52886892 577.33 753 0.218756614446792
52886893 360.78 551.56 -0.117680993601586
52886894 253 603.89 -1.06138667250788
52886895 430.11 591.67 0.105947394686604
52886896 312.56 588.56 -0.55911633735892
52886897 410.44 681.89 -0.293823579548276
52886898 523.22 695.11 0.179745790676098
52886899 374.78 787.44 -0.79119924360363
52886900 455.89 712.22 -0.163546658757439
52886901 1054.78 1115.44 0.663018322869041

Total number of rows: 388468

Table truncated, full table size 15846 Kbytes.




Supplementary file Size Download File type/resource
GSM210493.gff.gz 4.0 Mb (ftp)(http) GFF
GSM210493_60995_532.pair.gz 6.5 Mb (ftp)(http) PAIR
GSM210493_60995_635.pair.gz 6.5 Mb (ftp)(http) PAIR
Processed data included within Sample table

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