|
| Status |
Public on Nov 19, 2007 |
| Title |
CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set07_1 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
CD4+ DNAse-treated genomic DNA, replicate #1
|
| Organism |
Homo sapiens |
| Characteristics |
Treatment:DNAse digested
|
| Treatment protocol |
DNAse digestion
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNAse treated DNA was extracted and amplified.
|
| Label |
Cy3
|
| Label protocol |
Sample was labeled by Nimblegen according to their established protocol.
|
| |
|
| Channel 2 |
| Source name |
CD4+ input genomic DNA, replicate #1
|
| Organism |
Homo sapiens |
| Characteristics |
Treatment:No DNAse
|
| Treatment protocol |
None
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Input DNA was extracted.
|
| Label |
Cy5
|
| Label protocol |
Sample was labeled by Nimblegen according to their established protocol.
|
| |
|
| |
| Hybridization protocol |
Sample was hybridized by Nimblegen according to their established protocol.
|
| Scan protocol |
Sample was scanned by Nimblegen according to their established protocol.
|
| Description |
CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set07_1
|
| Data processing |
Data were normalized to have median log2 ratio of zero and median absolute deviation (MAD) of one.
|
| |
|
| Submission date |
Jul 13, 2007 |
| Last update date |
Aug 14, 2011 |
| Contact name |
Sean Davis |
| E-mail(s) |
sdavis2@mail.nih.gov
|
| Phone |
301-435-2652
|
| Organization name |
National Cancer Institute
|
| Lab |
Genetics Branch
|
| Street address |
37 Convent Drive, Room 6138
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
|
| Platform ID |
GPL5539 |
| Series (1) |
| GSE8486 |
Whole genome DNAse hypersensitivity in human CD4+ T-cells |
|
