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Sample GSM210500 Query DataSets for GSM210500
Status Public on Nov 19, 2007
Title CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set11_1
Sample type genomic
 
Channel 1
Source name CD4+ DNAse-treated genomic DNA, replicate #1
Organism Homo sapiens
Characteristics Treatment:DNAse digested
Treatment protocol DNAse digestion
Extracted molecule genomic DNA
Extraction protocol DNAse treated DNA was extracted and amplified.
Label Cy3
Label protocol Sample was labeled by Nimblegen according to their established protocol.
 
Channel 2
Source name CD4+ input genomic DNA, replicate #1
Organism Homo sapiens
Characteristics Treatment:No DNAse
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol Input DNA was extracted.
Label Cy5
Label protocol Sample was labeled by Nimblegen according to their established protocol.
 
 
Hybridization protocol Sample was hybridized by Nimblegen according to their established protocol.
Scan protocol Sample was scanned by Nimblegen according to their established protocol.
Description CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set11_1
Data processing Data were normalized to have median log2 ratio of zero and median absolute deviation (MAD) of one.
 
Submission date Jul 13, 2007
Last update date Aug 14, 2011
Contact name Sean Davis
E-mail(s) sdavis2@mail.nih.gov
Phone 301-435-2652
Organization name National Cancer Institute
Lab Genetics Branch
Street address 37 Convent Drive, Room 6138
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL5543
Series (1)
GSE8486 Whole genome DNAse hypersensitivity in human CD4+ T-cells

Data table header descriptions
ID_REF Feature match id
RED_INTENSITY Red intensity of the original scan (raw data)
GREEN_INTENSITY Green intensity of the original scan (raw data)
VALUE Median centered, MAD scaled value

Data table
ID_REF RED_INTENSITY GREEN_INTENSITY VALUE
52886882 991.89 2279.56 -0.210332738909597
52886883 619.56 1740.44 -0.682280447927892
52886884 897.56 2105 -0.257972876213447
52886885 812.33 1608.22 0.140290523126523
52886886 1161.22 2165.56 0.280796580534085
52886887 1084.33 1981 0.329149159785604
52886888 1437.33 1850.22 1.15222571729557
52886889 780.67 2074.11 -0.551224708102475
52886890 936.11 1522 0.603236608263087
52886891 829.78 1697.33 0.0634784159517067
52886892 814.89 1613.67 0.139734229595537
52886893 364.56 1415.22 -1.44269168516552
52886894 22926.22 5516.33 5.09476392887972
52886895 647 1523.33 -0.267180916542133
52886896 728.67 1683.11 -0.222209327744281
52886897 988.11 1636.67 0.559564372954056
52886898 885 1496.11 0.511581413992686
52886899 670.33 1520.56 -0.179627018980045
52886900 694.89 1630.56 -0.259229293947589
52886901 1432.33 2477.22 0.457986242745884

Total number of rows: 388468

Table truncated, full table size 16007 Kbytes.




Supplementary file Size Download File type/resource
GSM210500.gff.gz 3.9 Mb (ftp)(http) GFF
GSM210500_60612_532.pair.gz 6.7 Mb (ftp)(http) PAIR
GSM210500_60612_635.pair.gz 6.6 Mb (ftp)(http) PAIR
Processed data included within Sample table

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