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GEO accession:
Sample GSM21213
Query DataSets for GSM21213
Status
Public on Jul 19, 2004
Title
Severe 872
Sample type
RNA
Source name
hippocampal CA1 tissue
Organism
Homo sapiens
Characteristics
ref #: 872
group: Severe
nft: 24.6
braak: 6
age: 79
mmse: 2
Sex: F
pmi: 3.67
Extracted molecule
total RNA
Description
Severe AD (MMSE<14); correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
Keywords = bioinformatics
Keywords = gene expression
Keywords = memory
Keywords = synaptic plasticity
Keywords = myelin
Keywords = inflamation
Keywords = aging
Keywords = behavior
Keywords = Alzheimer's
Keywords = microarray
Submission date
Apr 08, 2004
Last update date
Jan 19, 2017
Contact name
Eric M Blalock
E-mail(s)
eric.blalock@uky.edu
Phone
859-323-8033
Organization name
University of Kentucky
Department
Molecular and Biomedical Pharmacology
Lab
Blalock
Street address
800 Rose St.
City
Lexington
State/province
KY
ZIP/Postal code
40475
Country
USA
Platform ID
GPL96
Series (1)
GSE1297
Incipient Alzheimer's Disease: Microarray Correlation Analyses
Relations
Affiliated with
GSM697336
Data table header descriptions
ID_REF
Affymetrix gene ID
VALUE
'signal' a measure of the abundance of a transcript
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
863.8
P
0.325
AFFX-BioB-M_at
1102.1
P
0.082
AFFX-BioB-3_at
473.2
P
0.391
AFFX-BioC-5_at
2331.4
P
0.105
AFFX-BioC-3_at
2156
P
0.476
AFFX-BioDn-5_at
1614.2
P
0.274
AFFX-BioDn-3_at
13541.9
P
0.039
AFFX-CreX-5_at
21867.7
P
1
AFFX-CreX-3_at
29281.9
P
1
AFFX-DapX-5_at
34
A
0.792
AFFX-DapX-M_at
87.6
A
0.911
AFFX-DapX-3_at
10.8
A
0.753
AFFX-LysX-5_at
8.2
A
0.156
AFFX-LysX-M_at
25.1
A
0.884
AFFX-LysX-3_at
11.2
A
0.035
AFFX-PheX-5_at
9.9
A
0.793
AFFX-PheX-M_at
14.8
A
0.2
AFFX-PheX-3_at
23
A
0.208
AFFX-ThrX-5_at
36.9
A
0.18
AFFX-ThrX-M_at
46.6
A
0.445
Total number of rows:
22283
Table truncated, full table size
531 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM21213.cel.gz
3.3 Mb
(ftp)
(http)
CEL
GSM21213.exp.gz
472 b
(ftp)
(http)
EXP
GSM21213.rpt.gz
972 b
(ftp)
(http)
RPT
GSM21213.txt.gz
201.2 Kb
(ftp)
(http)
TXT
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