NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM21216 Query DataSets for GSM21216
Status Public on Jul 19, 2004
Title Incipient 994
Sample type RNA
 
Source name hippocampal CA1 tissue
Organism Homo sapiens
Characteristics ref #: 994
group: Incipient
nft: 6.4
braak: 5
age: 83
mmse: 26
Sex: F
pmi: 2.25
Extracted molecule total RNA
 
Description Incipient AD (MMSE 20-26); correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
Keywords = bioinformatics
Keywords = gene expression
Keywords = memory
Keywords = synaptic plasticity
Keywords = myelin
Keywords = inflamation
Keywords = aging
Keywords = behavior
Keywords = Alzheimer's
Keywords = microarray
 
Submission date Apr 08, 2004
Last update date Jan 19, 2017
Contact name Eric M Blalock
E-mail(s) eric.blalock@uky.edu
Phone 859-323-8033
Organization name University of Kentucky
Department Molecular and Biomedical Pharmacology
Lab Blalock
Street address 800 Rose St.
City Lexington
State/province KY
ZIP/Postal code 40475
Country USA
 
Platform ID GPL96
Series (1)
GSE1297 Incipient Alzheimer's Disease: Microarray Correlation Analyses
Relations
Affiliated with GSM697318

Data table header descriptions
ID_REF Affymetrix gene ID
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 576.1 P 0.325
AFFX-BioB-M_at 1111.2 P 0.082
AFFX-BioB-3_at 643.5 P 0.391
AFFX-BioC-5_at 1748.4 P 0.105
AFFX-BioC-3_at 1659.1 P 0.476
AFFX-BioDn-5_at 1880.5 P 0.274
AFFX-BioDn-3_at 10106.5 P 0.039
AFFX-CreX-5_at 17124.5 P 1
AFFX-CreX-3_at 24457.8 P 1
AFFX-DapX-5_at 3.8 A 0.792
AFFX-DapX-M_at 36.2 A 0.911
AFFX-DapX-3_at 7.1 A 0.753
AFFX-LysX-5_at 33.4 A 0.156
AFFX-LysX-M_at 35.2 A 0.884
AFFX-LysX-3_at 15.8 A 0.035
AFFX-PheX-5_at 5 A 0.793
AFFX-PheX-M_at 5.2 A 0.2
AFFX-PheX-3_at 32.3 A 0.208
AFFX-ThrX-5_at 8.2 A 0.18
AFFX-ThrX-M_at 13 A 0.445

Total number of rows: 22283

Table truncated, full table size 529 Kbytes.




Supplementary file Size Download File type/resource
GSM21216.cel.gz 3.4 Mb (ftp)(http) CEL
GSM21216.exp.gz 471 b (ftp)(http) EXP
GSM21216.rpt.gz 966 b (ftp)(http) RPT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap