GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM21220
Query DataSets for GSM21220
Status
Public on Jul 19, 2004
Title
Control 1015
Sample type
RNA
Source name
hippocampal CA1 tissue
Organism
Homo sapiens
Characteristics
ref #: 1015
group: Control
nft: 0.4
braak: 1
age: 75
mmse: 29
Sex: M
pmi: 3.35
Extracted molecule
total RNA
Description
Control (MMSE>25); correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
Keywords = bioinformatics
Keywords = gene expression
Keywords = memory
Keywords = synaptic plasticity
Keywords = myelin
Keywords = inflamation
Keywords = aging
Keywords = behavior
Keywords = Alzheimer's
Keywords = microarray
Submission date
Apr 08, 2004
Last update date
Jan 19, 2017
Contact name
Eric M Blalock
E-mail(s)
eric.blalock@uky.edu
Phone
859-323-8033
Organization name
University of Kentucky
Department
Molecular and Biomedical Pharmacology
Lab
Blalock
Street address
800 Rose St.
City
Lexington
State/province
KY
ZIP/Postal code
40475
Country
USA
Platform ID
GPL96
Series (1)
GSE1297
Incipient Alzheimer's Disease: Microarray Correlation Analyses
Relations
Affiliated with
GSM697312
Data table header descriptions
ID_REF
Affymetrix gene ID
VALUE
'signal' a measure of the abundance of a transcript
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
659.7
P
0.325
AFFX-BioB-M_at
1203.1
P
0.082
AFFX-BioB-3_at
654.1
P
0.391
AFFX-BioC-5_at
1886.8
P
0.105
AFFX-BioC-3_at
1505.8
P
0.476
AFFX-BioDn-5_at
1958.2
P
0.274
AFFX-BioDn-3_at
9957.6
P
0.039
AFFX-CreX-5_at
17432.9
P
1
AFFX-CreX-3_at
25534.2
P
1
AFFX-DapX-5_at
21.4
A
0.792
AFFX-DapX-M_at
35.1
A
0.911
AFFX-DapX-3_at
2.5
A
0.753
AFFX-LysX-5_at
3.2
A
0.156
AFFX-LysX-M_at
25.7
A
0.884
AFFX-LysX-3_at
27.5
A
0.035
AFFX-PheX-5_at
4.5
A
0.793
AFFX-PheX-M_at
4.7
A
0.2
AFFX-PheX-3_at
11.5
A
0.208
AFFX-ThrX-5_at
35.3
A
0.18
AFFX-ThrX-M_at
7.1
A
0.445
Total number of rows:
22283
Table truncated, full table size
529 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM21220.cel.gz
3.4 Mb
(ftp)
(http)
CEL
GSM21220.exp.gz
470 b
(ftp)
(http)
EXP
GSM21220.rpt.gz
964 b
(ftp)
(http)
RPT
GSM21220.txt.gz
199.4 Kb
(ftp)
(http)
TXT
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
