NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2127628 Query DataSets for GSM2127628
Status Public on May 12, 2016
Title PT_123A_Luteal
Sample type RNA
 
Source name Luteal_cervix
Organism Homo sapiens
Characteristics tissue: endocervix
phases of the menstrual cycle: Luteal
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from 30 mg of frozen tissue using the RNeasy Fibrous Tissue Mini Kit (Qiagen) according to manufacturer protocols. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised by Ingenuity
 
Submission date Apr 20, 2016
Last update date May 13, 2016
Contact name Julie Kim
E-mail(s) j-kim4@northwestern.edu
Phone 312-503-5377
Organization name Northwestern University
Department Obstetrics and Gynecology
Lab Lurie 4-250
Street address 303 E. Superior St
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL10558
Series (1)
GSE80455 Transcriptional Profiling of Human Endocervical Tissues Reveals Distinct Gene Expression in the Follicular and Luteal Phases of the Menstrual Cycle

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_1762337 6.948572702
ILMN_2055271 7.01159862
ILMN_1736007 7.021482546
ILMN_2383229 6.882318389
ILMN_1806310 6.930857289
ILMN_1779670 6.804203906
ILMN_1653355 6.922248327
ILMN_1717783 6.797129833
ILMN_1705025 6.91437301
ILMN_1814316 6.843288777
ILMN_2359168 6.83863794
ILMN_1731507 6.746913219
ILMN_1787689 6.903174915
ILMN_3241953 7.119866129
ILMN_1745607 9.473494897
ILMN_2136495 6.833129227
ILMN_1668111 6.909484765
ILMN_2295559 7.008266998
ILMN_1735045 8.101609279
ILMN_1680754 7.043152452

Total number of rows: 47323

Table truncated, full table size 1150 Kbytes.




Supplementary file Size Download File type/resource
GSM2127628_PT_123A.idat.gz 1.6 Mb (ftp)(http) IDAT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap