|
| Status |
Public on Aug 02, 2017 |
| Title |
Alor02 |
| Sample type |
genomic |
| |
|
| Source name |
blood
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: blood
population: Alor
island: Alor
country: Indonesia
region: Southeast Asia
gender: Male
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extraction of genomic DNA from blood was performed using standard extraction protocols.
|
| Label |
biotin
|
| Label protocol |
Standard Affymetrix procedures
|
| |
|
| Hybridization protocol |
Standard Affymetrix procedures
|
| Scan protocol |
Standard Affymetrix procedures
|
| Description |
Genomic DNA extracted from blood was genotyped using Affymetrix platform Axiom_GW_Hu_SNP
|
| Data processing |
Affymetrix Power Tools (APT) Software Package (version 1.12.0) has been used for data analysis. Application 'apt-probeset-genotype' has been used for making genotype calls.
Processed data is provided for each sample. Processed data include genotype data for each rs number. Dataset is also converted into PLINK format (http://pngu.mgh.harvard.edu/~purcell/plink/) . Files GSE80534_INDONESIA_AUG2016.bed GSE80534_INDONESIA_AUG2016.bim GSE80534_INDONESIA_AUG2016.fam are provided.
|
| |
|
| Submission date |
Apr 21, 2016 |
| Last update date |
Aug 02, 2017 |
| Contact name |
Tatiana M. Karafet |
| E-mail(s) |
tkarafet@email.arizona.edu
|
| Phone |
520-626-0404
|
| Organization name |
University of Arizona
|
| Department |
ARL
|
| Lab |
Michael Hammer's Research Group
|
| Street address |
BSW #246, 1041 E Lowell Str.
|
| City |
Tucson |
| State/province |
AZ |
| ZIP/Postal code |
85721 |
| Country |
USA |
| |
|
| Platform ID |
GPL18441 |
| Series (1) |
| GSE80534 |
Population Prehistory in Island Southeast Asia |
|
