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Sample GSM213707 Query DataSets for GSM213707
Status Public on Dec 31, 2007
Title Day1A_Cy3_BT474
Sample type genomic
 
Source name breast cancer cell line
Organism Homo sapiens
Characteristics BT474 breast cancer cell line
Extracted molecule genomic DNA
Extraction protocol According to Snijders et al. Nat Genet 2001
Label Cy3
Label protocol DNA labeling protocol according to Enzo Life Sciences
 
Hybridization protocol Hybridization protocol available via www.agilent.com
Scan protocol Slides were scanned using the Agilent microarray scanner, protocol according to Agilent.
Description protocols according to manufacturer (Enzo Life Scienceswww.agilent.com)
Data processing Median Signal intensity minus median Background intensity; excluding negative values
 
Submission date Jul 30, 2007
Last update date Jul 31, 2007
Contact name Daoud Sie
E-mail(s) d.sie@vumc.nl
Phone +31 20 4442428
Organization name Vrije Universiteit Medical Center
Department Pathology
Lab Microarray Core Facility
Street address De Boelelaan 1117
City Amsterdam
ZIP/Postal code 1081 HV
Country Netherlands
 
Platform ID GPL5571
Series (1)
GSE8628 Across array comparative genomic hybridization

Data table header descriptions
ID_REF
gMedianSignal median signal intensity channel 1
gBGMedianSignal median background intensity channel 1
VALUE median signal intensity channel 1 minus median background intensity channel 1

Data table
ID_REF gMedianSignal gBGMedianSignal VALUE
1 3505 47
2 55 47
3 58.5 47
4 57 48
5 57 49
6 58.5 48
7 56 49
8 59 49
9 55 49
10 58 50
11 58 49
12 636 48 588
13 370 49 321
14 296 48 248
15 297 48 249
16 565 48 517
17 604 48 556
19 682.5 48 634.5
21 642 47 595
22 454.5 48 406.5

Total number of rows: 44612

Table truncated, full table size 810 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table
Processed data are available on Series record

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