|
| Status |
Public on Aug 10, 2016 |
| Title |
MCF10CA1h cells treated with vehicle control (ethanol), biological replicate 1 |
| Sample type |
genomic |
| |
|
| Source name |
MCF10CA1h cells treated with vehicle control (ethanol)
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: MCF10CA1h
treatment: Ethanol vehicle control
cell type: breast cancer cells
disease state: cancer
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from human breast cancer cell lines using standard phenol:chloroform extraction protocol
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
human lowly invasive breast cancer cell line
Sample 1
|
| Data processing |
BeadStudio software v3.2
|
| |
|
| Submission date |
Apr 28, 2016 |
| Last update date |
Aug 10, 2016 |
| Contact name |
Barbara Stefanska |
| E-mail(s) |
barbara.stefanska@ubc.ca
|
| Organization name |
The University of British Columbia
|
| Department |
Land and Food Systems
|
| Lab |
Stefanska Lab
|
| Street address |
2205 East Mall
|
| City |
Vancouver |
| State/province |
BC |
| ZIP/Postal code |
V6T 1Z4 |
| Country |
Canada |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE80794 |
Stilbenoids remodel the DNA methylation patterns in breast cancer cells and inhibit oncogenic NOTCH signaling through epigenetic regulation of MAML2 transcriptional activity |
|
