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Sample GSM213710 Query DataSets for GSM213710
Status Public on Dec 31, 2007
Title Day3A_Cy3_GC
Sample type genomic
 
Source name stomach
Organism Homo sapiens
Characteristics gastric cancer
Extracted molecule genomic DNA
Extraction protocol DNA isolation protocol available via www.vumc.nl/microarrays
Also described in Buffart et al, J Pathol. 2007 Jan;211(1):45-51
Label Cy3
Label protocol DNA labeling protocol according to Enzo Life Sciences
 
Hybridization protocol Hybridization protocol available via www.agilent.com
Scan protocol Slides were scanned using the Agilent microarray scanner, protocol according to Agilent.
Description protocols according to manufacturer (Enzo Life Scienceswww.agilent.com)
Data processing Median Signal intensity minus median Background intensity; excluding negative values
 
Submission date Jul 30, 2007
Last update date Jul 31, 2007
Contact name Daoud Sie
E-mail(s) d.sie@vumc.nl
Phone +31 20 4442428
Organization name Vrije Universiteit Medical Center
Department Pathology
Lab Microarray Core Facility
Street address De Boelelaan 1117
City Amsterdam
ZIP/Postal code 1081 HV
Country Netherlands
 
Platform ID GPL5571
Series (1)
GSE8628 Across array comparative genomic hybridization

Data table header descriptions
ID_REF
gMedianSignal median signal intensity channel 1
gBGMedianSignal median background intensity channel 1
VALUE median signal intensity channel 1 minus median background intensity channel 1, excluding negative values

Data table
ID_REF gMedianSignal gBGMedianSignal VALUE
1 1114 52
2 91 53
3 89 54
4 85 54
5 89.5 53
6 92 54
7 94 54
8 86 52
9 91 52
10 88.5 53
11 89 52
12 264 54 210
13 232.5 54 178.5
14 155 55 100
15 234 53 181
16 359 54 305
17 375 57 318
19 275 54 221
21 334.5 53 281.5
22 270 54 216

Total number of rows: 44612

Table truncated, full table size 793 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table
Processed data are available on Series record

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