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Sample GSM213719 Query DataSets for GSM213719
Status Public on Dec 31, 2007
Title Day3C_Cy5_BT474
Sample type genomic
 
Source name breast cancer Cell line
Organism Homo sapiens
Characteristics BT474 breast cancer Cell line
Extracted molecule genomic DNA
Extraction protocol According to Snijders et al. Nat Genet 2001
Label Cy5
Label protocol DNA labeling protocol according to Enzo Life Sciences
 
Hybridization protocol Hybridization protocol available via www.agilent.com
Scan protocol Slides were scanned using the Agilent microarray scanner, protocol according to Agilent.
Description protocols according to manufacturer (Enzo Life Scienceswww.agilent.com)
Data processing Median Signal intensity minus median Background intensity; excluding negative values
 
Submission date Jul 30, 2007
Last update date Jul 31, 2007
Contact name Daoud Sie
E-mail(s) d.sie@vumc.nl
Phone +31 20 4442428
Organization name Vrije Universiteit Medical Center
Department Pathology
Lab Microarray Core Facility
Street address De Boelelaan 1117
City Amsterdam
ZIP/Postal code 1081 HV
Country Netherlands
 
Platform ID GPL5571
Series (1)
GSE8628 Across array comparative genomic hybridization

Data table header descriptions
ID_REF
rMedianSignal median signal intensity channel 1
rBGMedianSignal median background intensity channel 1
VALUE median signal intensity channel 1 minus median background intensity channel 1, excluding negative values

Data table
ID_REF rMedianSignal rBGMedianSignal VALUE
1 3973 72
2 90 72
3 95 72
4 95 72
5 99 72
6 96.5 71
7 104 71
8 109.5 72
9 96 71
10 99.5 70
11 93 71.5
12 8998 72 8926
13 544 71 473
14 489.5 71 418.5
15 370.5 71 299.5
16 570.5 74 496.5
17 835 72 763
19 851 72 779
21 606.5 86 520.5
22 525.5 71 454.5

Total number of rows: 44612

Table truncated, full table size 835 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table
Processed data are available on Series record

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