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Sample GSM213740 Query DataSets for GSM213740
Status Public on Dec 31, 2007
Title Day7D_Cy3_BT474
Sample type genomic
 
Source name breast cancer cell line
Organism Homo sapiens
Characteristics BT474 breast cancer cell line
Extracted molecule genomic DNA
Extraction protocol According to Snijders et al. Nat Genet 2001
Label Cy3
Label protocol DNA labeling protocol according to Enzo Life Sciences
 
Hybridization protocol Hybridization protocol available via www.agilent.com
Scan protocol Slides were scanned using the Agilent microarray scanner, protocol according to Agilent.
Description protocols according to manufacturer (Enzo Life Scienceswww.agilent.com)
Data processing Median Signal intensity minus median Background intensity; excluding negative values
 
Submission date Jul 30, 2007
Last update date Jul 31, 2007
Contact name Daoud Sie
E-mail(s) d.sie@vumc.nl
Phone +31 20 4442428
Organization name Vrije Universiteit Medical Center
Department Pathology
Lab Microarray Core Facility
Street address De Boelelaan 1117
City Amsterdam
ZIP/Postal code 1081 HV
Country Netherlands
 
Platform ID GPL5477
Series (1)
GSE8628 Across array comparative genomic hybridization

Data table header descriptions
ID_REF
gMedianSignal median signal intensity channel 1
gBGMedianSignal median background intensity channel 1
VALUE median signal intensity channel 1 minus median background intensity channel 1, excluding negative values

Data table
ID_REF gMedianSignal gBGMedianSignal VALUE
1 2515 48
2 52 49
3 53.5 49
4 52 49
5 52 48
6 50 48
7 52 50
8 51 50
9 55 50
10 54.5 49
11 54 48
12 286 48 238
13 235 50 185
14 1517 52 1465
15 329.5 51 278.5
16 630 49 581
17 679 49 630
18 337 51 286
19 249.5 49 200.5
20 505 49 456

Total number of rows: 45220

Table truncated, full table size 811 Kbytes.




Supplementary data files not provided
Processed data are available on Series record

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