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Sample GSM2156 Query DataSets for GSM2156
Status Public on Jun 27, 2002
Title Serum 16
Sample type RNA
 
Channel 1
Source name T=0
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name 16 hours
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Serum-response
Subcategory: Fibroblasts
Scanning Software: unknown
Software version: unknown
Lot batch = 322
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL169
Series (2)
GSE55 Serum stimulation of fibroblasts experiment set
GSE58 Serum stimulation of fibroblasts

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1290 164 858 116 742 650 102 752 .11 0 -.685 0 0 1.414 1.608 .707 .622 .19 50 58 60 68 -.685
2 1311 160 867 120 747 655 105 760 0 -.608 0 0 1.333 1.524 .75 .656 50 58 68 76 -.608
3 1276 157 858 142 716 628 124 752 .2 0 -.34 0 0 1.106 1.266 .904 .79 .33 50 58 76 84 -.34
4 1254 146 849 133 716 628 116 744 .03 0 -.332 0 0 1.098 1.259 .911 .795 .05 50 58 85 93 -.332
5 1261 180 884 125 759 665 110 775 .09 0 -.71 0 0 1.44 1.636 .694 .611 .18 50 58 93 101 -.71
6 1251 148 853 121 732 642 106 748 0 -.482 0 0 1.223 1.396 .818 .716 50 58 102 110 -.482
7 1218 164 884 168 716 628 147 775 .24 0 -.158 0 0 .976 1.116 1.024 .896 .37 50 58 110 118 -.158
8 1235 170 886 127 759 665 112 777 0 -.602 0 0 1.339 1.518 .747 .659 50 58 119 127 -.602
9 1272 130 869 134 735 644 118 762 0 -.14 0 0 .97 1.102 1.031 .908 50 58 127 135 -.14
10 1247 279 1067 287 780 684 251 935 .82 0 -.153 0 0 .972 1.112 1.029 .9 .91 50 58 136 144 -.153
11 1229 139 902 146 756 663 128 791 .6 0 -.119 0 0 .952 1.086 1.05 .921 .48 50 58 144 152 -.119
12 1171 174 844 114 730 640 100 740 0 -.799 0 0 1.526 1.74 .655 .575 50 58 153 161 -.799
13 1218 139 878 122 756 663 107 770 .2 0 -.377 0 0 1.139 1.299 .878 .77 .31 50 58 161 169 -.377
14 1213 200 928 136 792 694 120 814 .23 0 -.737 0 0 1.471 1.667 .68 .6 .46 50 58 170 178 -.737
15 1153 180 946 185 761 667 162 829 .65 0 -.152 0 0 .973 1.111 1.028 .9 .72 50 58 178 186 -.152
16 1143 146 880 104 776 680 91 771 .01 0 -.682 0 0 1.404 1.604 .712 .623 .02 50 58 187 195 -.682
17 1156 114 862 114 748 656 100 756 .06 0 -.189 0 0 1 1.14 1 .877 .07 50 58 195 203 -.189
18 1132 138 864 126 738 647 110 757 .03 0 -.327 0 0 1.095 1.255 .913 .797 .04 50 58 204 212 -.327
19 1113 152 866 132 734 643 116 759 .05 0 -.39 0 0 1.152 1.31 .868 .763 .08 50 58 212 220 -.39
20 1091 139 843 116 727 637 102 739 .02 0 -.447 0 0 1.198 1.363 .835 .734 .04 50 58 221 229 -.447

Total number of rows: 9984

Table truncated, full table size 992 Kbytes.




Supplementary data files not provided
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