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Sample GSM2157 Query DataSets for GSM2157
Status Public on Jun 27, 2002
Title Serum 20
Sample type RNA
 
Channel 1
Source name T=0
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name 20 hours
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Serum-response
Subcategory: Fibroblasts
Scanning Software: unknown
Software version: unknown
Lot batch = 323
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL169
Series (2)
GSE55 Serum stimulation of fibroblasts experiment set
GSE58 Serum stimulation of fibroblasts

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 675 76 614 85 529 485 78 563 0 .037 0 0 .894 .974 1.118 1.026 49 57 63 71 .037
2 660 95 645 90 555 509 82 591 .02 0 -.212 0 0 1.056 1.159 .947 .863 .03 49 57 71 79 -.212
3 675 85 634 80 554 508 73 581 .02 0 -.22 0 0 1.063 1.164 .941 .859 .03 49 57 80 88 -.22
4 706 81 633 78 555 509 71 580 .15 0 -.19 0 0 1.038 1.141 .963 .877 .2 49 57 88 96 -.19
5 676 93 661 92 569 522 84 606 0 -.147 0 0 1.011 1.107 .989 .903 49 57 97 105 -.147
6 663 96 645 94 551 505 86 591 0 -.159 0 0 1.021 1.116 .979 .896 49 57 105 113 -.159
7 679 81 660 83 577 529 76 605 .09 0 -.092 0 0 .976 1.066 1.025 .938 .11 49 57 114 122 -.092
8 687 82 678 94 584 535 87 622 0 .085 0 0 .872 .943 1.146 1.061 49 57 122 130 .085
9 682 66 662 90 572 524 83 607 .03 0 .331 0 0 .733 .795 1.364 1.258 .03 49 57 131 139 .331
10 692 163 794 171 623 571 157 728 .81 0 -.054 0 0 .953 1.038 1.049 .963 .92 49 57 139 147 -.054
11 663 85 689 101 588 539 93 632 0 .13 0 0 .842 .914 1.188 1.094 49 57 148 156 .13
12 672 81 707 94 613 562 86 648 .09 0 .086 0 0 .862 .942 1.16 1.062 .1 49 57 156 164 .086
13 645 103 692 104 588 539 95 634 .06 0 -.117 0 0 .99 1.084 1.01 .922 .07 49 57 165 173 -.117
14 708 122 700 101 599 549 93 642 0 -.392 0 0 1.208 1.312 .828 .762 49 57 173 181 -.392
15 679 103 774 144 630 577 133 710 .54 0 .369 0 0 .715 .774 1.398 1.291 .47 49 57 182 190 .369
16 668 91 761 119 642 588 110 698 .35 0 .274 0 0 .765 .827 1.308 1.209 .14 49 57 190 198 .274
17 670 81 727 93 634 581 85 666 .03 0 .07 0 0 .871 .953 1.148 1.049 .03 49 57 199 207 .07
18 621 109 752 101 651 597 92 689 0 -.245 0 0 1.079 1.185 .927 .844 49 57 207 215 -.245
19 640 88 769 101 668 612 93 705 .2 0 .08 0 0 .871 .946 1.148 1.057 .17 49 57 216 224 .08
20 642 89 768 148 620 568 136 704 .1 0 .612 0 0 .601 .654 1.663 1.528 .06 49 57 224 232 .612

Total number of rows: 9984

Table truncated, full table size 975 Kbytes.




Supplementary data files not provided
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