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Sample GSM2158 Query DataSets for GSM2158
Status Public on Jun 27, 2002
Title Serum 24
Sample type RNA
 
Channel 1
Source name T=0
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name 24 hours
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Serum-response
Subcategory: Fibroblasts
Scanning Software: unknown
Software version: unknown
Lot batch = 324
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL169
Series (2)
GSE55 Serum stimulation of fibroblasts experiment set
GSE58 Serum stimulation of fibroblasts

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 804 101 554 62 492 482 61 543 0 -.727 0 0 1.629 1.656 .614 .604 48 56 65 73 -.727
2 806 102 576 79 497 487 77 564 .35 0 -.406 0 0 1.291 1.325 .775 .755 .43 48 56 73 81 -.406
3 800 101 561 85 476 466 84 550 .03 0 -.266 0 0 1.188 1.202 .842 .832 .05 48 56 82 90 -.266
4 801 157 942 448 494 484 439 923 .95 0 1.483 0 0 .35 .358 2.854 2.796 .18 48 56 90 98 1.483
5 811 113 583 80 503 493 78 571 .06 0 -.535 0 0 1.413 1.449 .708 .69 .1 48 56 99 107 -.535
6 808 87 579 74 505 495 72 567 .16 0 -.273 0 0 1.176 1.208 .851 .828 .24 48 56 107 115 -.273
7 818 108 610 102 508 498 100 598 .3 0 -.111 0 0 1.059 1.08 .944 .926 .37 48 56 116 124 -.111
8 829 117 586 77 509 499 75 574 .12 0 -.642 0 0 1.519 1.56 .658 .641 .33 48 56 124 132 -.642
9 781 119 586 100 486 476 98 574 .11 0 -.28 0 0 1.19 1.214 .84 .824 .11 48 56 133 141 -.28
10 832 214 799 269 530 519 264 783 .9 0 .303 0 0 .796 .811 1.257 1.234 .83 48 56 141 149 .303
11 817 90 568 80 488 478 78 556 0 -.206 0 0 1.125 1.154 .889 .867 48 56 150 158 -.206
12 792 122 580 95 485 475 93 568 .17 0 -.392 0 0 1.284 1.312 .779 .762 .27 48 56 158 166 -.392
13 799 118 628 107 521 510 105 615 .17 0 -.168 0 0 1.103 1.124 .907 .89 .13 48 56 167 175 -.168
14 830 144 573 96 477 467 94 561 .21 0 -.615 0 0 1.5 1.532 .667 .653 .35 48 56 175 183 -.615
15 831 185 692 221 471 461 217 678 .93 0 .23 0 0 .837 .853 1.195 1.173 .79 48 56 184 192 .23
16 813 103 609 133 476 466 131 597 .52 0 .347 0 0 .774 .786 1.291 1.272 .36 48 56 192 200 .347
17 762 108 560 84 476 466 83 549 0 -.38 0 0 1.286 1.301 .778 .769 48 56 201 209 -.38
18 756 119 623 119 504 494 116 610 .38 0 -.037 0 0 1 1.026 1 .975 .2 48 56 209 217 -.037
19 769 97 557 71 486 476 70 546 .17 0 -.471 0 0 1.366 1.386 .732 .722 .27 48 56 218 226 -.471
20 761 93 576 107 469 459 105 564 .13 0 .175 0 0 .869 .886 1.151 1.129 .13 48 56 226 234 .175

Total number of rows: 9984

Table truncated, full table size 979 Kbytes.




Supplementary data files not provided
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