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Sample GSM2159 Query DataSets for GSM2159
Status Public on Jun 27, 2002
Title Serum 08
Sample type RNA
 
Channel 1
Source name T=0
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name 8 hours
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Serum-response
Subcategory: Fibroblasts
Scanning Software: unknown
Software version: unknown
Lot batch = 407
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL169
Series (2)
GSE55 Serum stimulation of fibroblasts experiment set
GSE58 Serum stimulation of fibroblasts

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1120 142 674 70 604 487 56 543 .01 0 -1.342 0 0 2.029 2.536 .493 .394 .03 55 63 45 53 -1.342
2 1085 202 713 88 625 504 71 575 .43 0 -1.508 0 0 2.295 2.845 .436 .351 .96 55 63 53 61 -1.508
3 1120 110 731 87 644 519 70 589 0 -.652 0 0 1.264 1.571 .791 .636 55 63 62 70 -.652
4 1137 165 717 89 628 506 72 578 .8 0 -1.196 0 0 1.854 2.292 .539 .436 5.52 55 63 71 79 -1.196
5 1160 308 714 100 614 495 80 575 .97 0 -1.945 0 0 3.08 3.85 .325 .26 9.4 55 63 79 87 -1.945
6 1132 109 687 97 590 475 79 554 .19 0 -.464 0 0 1.124 1.38 .89 .725 .35 55 63 88 96 -.464
7 1116 121 697 73 624 503 59 562 .1 0 -1.036 0 0 1.658 2.051 .603 .488 .24 55 63 97 105 -1.036
8 1132 130 703 79 624 503 63 566 .07 0 -1.045 0 0 1.646 2.063 .608 .485 .15 55 63 106 114 -1.045
9 1110 157 691 63 628 506 51 557 .05 0 -1.622 0 0 2.492 3.078 .401 .325 .18 55 63 114 122 -1.622
10 1084 289 783 125 658 530 101 631 .79 0 -1.517 0 0 2.312 2.861 .433 .349 2.83 55 63 123 131 -1.517
11 1028 100 788 114 674 543 92 635 .02 0 -.12 0 0 .877 1.087 1.14 .92 .02 55 63 132 140 -.12
12 1069 128 829 135 694 559 109 668 0 -.232 0 0 .948 1.174 1.055 .852 55 63 140 148 -.232
13 1084 181 742 95 647 521 77 598 .3 0 -1.233 0 0 1.905 2.351 .525 .425 .83 55 63 149 157 -1.233
14 1118 197 738 98 640 516 79 595 0 -1.318 0 0 2.01 2.494 .497 .401 55 63 158 166 -1.318
15 1065 534 1074 362 712 574 292 866 .89 0 -.871 0 0 1.475 1.829 .678 .547 1.83 55 63 167 175 -.871
16 1021 105 786 89 697 562 71 633 .05 0 -.564 0 0 1.18 1.479 .848 .676 .09 55 63 175 183 -.564
17 1106 178 803 87 716 577 70 647 .11 0 -1.346 0 0 2.046 2.543 .489 .393 .33 55 63 184 192 -1.346
18 1059 186 803 93 710 572 75 647 0 -1.31 0 0 2 2.48 .5 .403 55 63 193 201 -1.31
19 1107 107 793 120 673 542 97 639 .23 0 -.142 0 0 .892 1.103 1.121 .907 .31 55 63 201 209 -.142
20 1026 114 856 116 740 596 94 690 .14 0 -.278 0 0 .983 1.213 1.018 .825 .18 55 63 210 218 -.278

Total number of rows: 9984

Table truncated, full table size 973 Kbytes.




Supplementary data files not provided
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