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Sample GSM2160 Query DataSets for GSM2160
Status Public on Jun 27, 2002
Title Serum 12
Sample type RNA
 
Channel 1
Source name T=0
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name 12 hours
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Serum-response
Subcategory: Fibroblasts
Scanning Software: unknown
Software version: unknown
Lot batch = 408
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL169
Series (2)
GSE55 Serum stimulation of fibroblasts experiment set
GSE58 Serum stimulation of fibroblasts

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1220 141 1237 199 1038 774 149 923 .73 0 .08 0 0 .709 .946 1.411 1.057 .63 50 58 47 55 .08
2 1216 125 1318 176 1142 852 131 983 .47 0 .068 0 0 .71 .954 1.408 1.048 .48 50 58 55 63 .068
3 1206 141 1332 211 1121 836 158 994 .66 0 .164 0 0 .668 .892 1.496 1.121 .52 50 58 64 72 .164
4 1171 127 1118 248 870 649 185 834 .26 0 .543 0 0 .512 .686 1.953 1.457 .22 50 58 73 81 .543
5 1202 109 1291 138 1153 860 103 963 .3 0 -.082 0 0 .79 1.058 1.266 .945 .35 50 58 82 90 -.082
6 1172 132 1344 196 1148 856 146 1002 .49 0 .145 0 0 .673 .904 1.485 1.106 .4 50 58 90 98 .145
7 1192 132 1424 171 1253 935 127 1062 .48 0 -.056 0 0 .772 1.039 1.295 .962 .38 50 58 99 107 -.056
8 1215 124 1346 163 1183 882 122 1004 .2 0 -.023 0 0 .761 1.016 1.315 .984 .18 50 58 108 116 -.023
9 1245 145 1344 177 1167 870 132 1002 .49 0 -.136 0 0 .819 1.098 1.221 .91 .42 50 58 117 125 -.136
10 1221 466 1509 345 1164 868 258 1126 .92 0 -.853 0 0 1.351 1.806 .74 .554 2.45 50 58 125 133 -.853
11 1138 136 1272 226 1046 780 169 949 .51 0 .313 0 0 .602 .805 1.662 1.243 .32 50 58 134 142 .313
12 1133 157 1300 240 1060 791 179 970 .67 0 .189 0 0 .654 .877 1.529 1.14 .49 50 58 143 151 .189
13 1086 119 1076 107 969 723 79 802 .3 0 -.591 0 0 1.112 1.506 .899 .664 .52 50 58 152 160 -.591
14 1136 130 1006 250 756 564 186 750 0 .517 0 0 .52 .699 1.923 1.431 50 58 160 168 .517
15 1130 257 1421 367 1054 786 274 1060 .86 0 .092 0 0 .7 .938 1.428 1.066 .95 50 58 169 177 .092
16 1086 104 1133 130 1003 748 97 845 .27 0 -.101 0 0 .8 1.072 1.25 .933 .32 50 58 178 186 -.101
17 1163 98 1236 165 1071 799 123 922 .34 0 .328 0 0 .594 .797 1.684 1.255 .4 50 58 187 195 .328
18 1124 164 1277 210 1067 796 156 952 .7 0 -.072 0 0 .781 1.051 1.28 .951 .6 50 58 195 203 -.072
19 1110 126 1223 186 1037 773 139 912 .57 0 .142 0 0 .677 .906 1.476 1.103 .42 50 58 204 212 .142
20 1106 114 1243 129 1114 831 96 927 .12 0 -.248 0 0 .884 1.188 1.132 .842 .16 50 58 213 221 -.248

Total number of rows: 9984

Table truncated, full table size 985 Kbytes.




Supplementary data files not provided
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