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Sample GSM2167 Query DataSets for GSM2167
Status Public on Jun 27, 2002
Title Serum 0
Sample type RNA
 
Channel 1
Source name T=0
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name 0 minutes
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Serum-response
Subcategory: Fibroblasts
Scanning Software: unknown
Software version: unknown
Lot batch = 318
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL169
Series (2)
GSE55 Serum stimulation of fibroblasts experiment set
GSE58 Serum stimulation of fibroblasts

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1105 98 578 71 507 633 89 722 .28 0 -.139 0 0 1.38 1.101 .724 .908 .35 44 52 82 90 -.139
2 1105 146 570 80 490 612 100 712 .02 0 -.546 0 0 1.825 1.46 .548 .685 .04 44 52 90 98 -.546
3 1161 91 556 75 481 601 94 695 .12 0 .047 0 0 1.213 .968 .824 1.033 .15 44 52 99 107 .047
4 1116 87 584 99 485 606 124 730 0 .511 0 0 .879 .702 1.138 1.425 44 52 107 115 .511
5 1070 116 570 82 488 610 102 712 .43 0 -.186 0 0 1.415 1.137 .707 .879 .65 44 52 116 124 -.186
6 1034 129 581 75 506 632 94 726 .26 0 -.457 0 0 1.72 1.372 .581 .729 .39 44 52 124 132 -.457
7 1076 122 621 113 508 635 141 776 .57 0 .209 0 0 1.08 .865 .926 1.156 .57 44 52 133 141 .209
8 1069 1003 649 137 512 640 171 811 .67 0 -2.552 0 0 7.321 5.865 .137 .17 12.19 44 52 141 149 -2.552
9 1036 98 576 73 503 628 92 720 .13 0 -.091 0 0 1.342 1.065 .745 .939 .15 44 52 150 158 -.091
10 1094 332 785 277 508 635 346 981 .94 0 .06 0 0 1.199 .96 .834 1.042 .99 44 52 158 166 .06
11 1101 123 608 105 503 628 132 760 0 .102 0 0 1.171 .932 .854 1.073 44 52 167 175 .102
12 1076 125 620 104 516 645 130 775 .49 0 .057 0 0 1.202 .962 .832 1.04 .3 44 52 175 183 .057
13 1060 124 605 94 511 638 118 756 .37 0 -.072 0 0 1.319 1.051 .758 .952 .49 44 52 184 192 -.072
14 1097 141 614 100 514 642 125 767 .53 0 -.174 0 0 1.41 1.128 .709 .887 .68 44 52 192 200 -.174
15 1080 215 809 257 552 690 321 1011 .91 0 .578 0 0 .837 .67 1.195 1.493 .66 44 52 201 209 .578
16 1054 114 615 86 529 661 107 768 .22 0 -.091 0 0 1.326 1.065 .754 .939 .22 44 52 209 217 -.091
17 1067 88 628 76 552 690 95 785 .17 0 .11 0 0 1.158 .926 .864 1.08 .18 44 52 218 226 .11
18 1053 102 631 120 511 638 150 788 0 .556 0 0 .85 .68 1.176 1.471 44 52 226 234 .556
19 1068 96 670 122 548 685 152 837 .42 0 .663 0 0 .787 .632 1.271 1.583 .13 44 52 235 243 .663
20 1067 85 610 95 515 643 119 762 0 .485 0 0 .895 .714 1.118 1.4 44 52 243 251 .485

Total number of rows: 9984

Table truncated, full table size 987 Kbytes.




Supplementary data files not provided
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