|
| Status |
Public on Aug 21, 2018 |
| Title |
CRC22_A |
| Sample type |
genomic |
| |
|
| Source name |
Colorectal cancer
|
| Organism |
Homo sapiens |
| Characteristics |
group: colorectal cancer
group: A
tnm: T3N0M0
|
| Treatment protocol |
-
|
| Growth protocol |
-
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
10 tissue sections of 10 μm were cut, scraped, and processed according to manufacturers’ protocol (DNA mini kit, QIAgen cat.no. 51304).
|
| Label |
C-Bio and A-DNP
|
| Label protocol |
processed according to manufacturer's protocol (Infinium Assay, Illumina)
|
| |
|
| Hybridization protocol |
hybridized to Illumina Human 610-quad bead-chip, containing 610,000 probes covering the whole genome
|
| Scan protocol |
Spot intensities were measured using the Illumina Bead Array Reader
|
| Description |
CRC22
|
| Data processing |
Log transformed intensity measurements were processed by circular binary segmentation (CBS) algorithm (Matlab R2015a, The MathWorks) to identify chromosomal aberrations
Calling of copy number levels was performed as described in Joosse et al (2009, 2012)
|
| |
|
| Submission date |
Jun 03, 2016 |
| Last update date |
Aug 21, 2018 |
| Contact name |
Simon A Joosse |
| E-mail(s) |
s.joosse@in-silico.net
|
| Organization name |
University Medical Center Hamburg-Eppendorf
|
| Department |
Institute of Tumor Biology
|
| Street address |
Martinistrasse 52
|
| City |
Hamburg |
| ZIP/Postal code |
20246 |
| Country |
Germany |
| |
|
| Platform ID |
GPL8887 |
| Series (1) |
| GSE82228 |
Chromosomal aberrations associated with sequential steps of the metastatic cascade in colorectal cancer patients |
|
