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Sample GSM2190943 Query DataSets for GSM2190943
Status Public on Jun 22, 2016
Title ChIP-seq from forebrain (ENCLB278YWT)
Sample type SRA
 
Source name Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (16.5 days)
Organism Mus musculus
Characteristics antibody: H3K9ac
tissue_type: forebrain
biomaterial_type: tissue
description: Forebrain pooled from embyonic 16.5 day mice
biosample encode accession: ENCBS156DHU (SAMN04284016)
age: 16.5 day
donor_id: ENCDO956IXV
dev stage: embryonic
Sex: pooled male and female
health state: healthy
lab: Len Pennacchio, LBNL
link: ENCBS156DHU at ENCODE; https://www.encodeproject.org/ENCBS156DHU/
link: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/
link: excision protocol; https://www.encodeproject.org/documents/631aa21c-8e48-467e-8cac-d40c875b3913/@@download/attachment/StandardTissueExcisionProtocol_02132017.pdf
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/89795b31-e65a-42ca-9d7b-d75196f6f4b3/@@download/attachment/Ren%20Lab%20ENCODE%20Chromatin%20Immunoprecipitation%20Protocol_V2.pdf
general protocol: https://www.encodeproject.org/documents/4f73fbc3-956e-47ae-aa2d-41a7df552c81/@@download/attachment/Ren_ChIP_Library_Preparation_v060614.pdf
general protocol: https://www.encodeproject.org/documents/3125496b-c833-4414-bf5f-84dd633eb30d/@@download/attachment/Ren_Tissue_Fixation_and_Sonication_v060614.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR014TEJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 16.5 day mouse forebrain
experiment encode accession: ENCSR014TEJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR587JRQ
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB278YWT
size range: 300-500
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jun 07, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (1)
GSE82353 ChIP-seq from forebrain (ENCSR014TEJ)
Relations
BioSample SAMN04284016
SRA SRX1832766
Named Annotation GSM2190943_ENCFF501DPD_signal_p-value_mm10.bigWig
Named Annotation GSM2190943_ENCFF070IPT_fold_change_over_control_mm10.bigWig
Named Annotation GSM2190943_ENCFF181DZR_peaks_mm10.bed.gz

Supplementary file Size Download File type/resource
GSM2190943_ENCFF070IPT_fold_change_over_control_mm10.bigWig 401.2 Mb (ftp)(http) BIGWIG
GSM2190943_ENCFF181DZR_peaks_mm10.bed.gz 850.4 Kb (ftp)(http) BED
GSM2190943_ENCFF501DPD_signal_p-value_mm10.bigWig 343.5 Mb (ftp)(http) BIGWIG
GSM2190943_ENCFF706SIJ_peaks_mm10.bigBed 2.6 Mb (ftp)(http) BIGBED
GSM2190943_ENCLB278YWT_README.txt.gz 1.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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